GgaEX6042523 @ galGal3
Exon Skipping
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21312629-21323562:-
Coord C1 exon
chr7:21323083-21323562
Coord A exon
chr7:21313130-21313250
Coord C2 exon
chr7:21312629-21312783
Length
121 bp
Sequences
Splice sites
3' ss Seq
ATGTGGGGTTTAATTCACAGAAA
3' ss Score
6.45
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTACTCAACCTGTTTCTGGCCTTGCTCCTGAGCTCCTTTAGTTCAGACAACCTTGCAGCTACAGATGATGATAATGAAATGAACAACCTCCAGATTGCTGTGGCAAGGATTCAGAAAGGCATAGATTTTGTGAAGAGAAAAGTGCGTGAATTCATCCAAAAAGCCTTTGTTAGAAAGCAGAAAGTTTTAGATGAAATCAAACCTCTTGAAGACCTAAACAACAAAAAAGACAGCTGTATTTCCAATCACACGATAGTAGAAATAGGTAAAAACCTTGCCTATCTTAAAGAAGGGAATGGAACTACCAGTGGCATAGGCAGCAGCGTGGAAAAATATGTTGTTGATGAAAGTGATTACATGTCCTTCATAAACAACCCAAGTCTCACTGTGACAGTGCCAATTGCCGTTGGGGAATCTGATTTTGAAAATTTAAATACAGAGGAGTTTAGCAGCGAGTCAGACCTGGAAGAAAGCAAAGAG
Seq A exon
AAATTAAATGCCTCCAGTTCATCAGAAGGCAGCACAGTTGATATTGGACTACCTCCAGAAGGGGAACAGCCAGAAGTAGAACCTGAAGAATCTCTGGAGCCTGAGGCTTGTTTCACAGAAG
Seq C2 exon
GCTGTGTGCGGAGATTCAAGTGCTGTCAAGTCAGTGTAGAAGATGGGAAAGGGAAAATCTGGTGGAATCTTAGGAAAACGTGCTATAAGATTGTTGAACACAACTGGTTTGAGACCTTCATTGTCTTCATGATTCTCCTCAGCAGTGGGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'25-23,'25-22,26-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.707 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=5.0),PF065128=Na_trans_assoc=PU(61.3=85.0)
A:
PF065128=Na_trans_assoc=FE(18.0=100)
C2:
PF065128=Na_trans_assoc=PD(19.8=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGACAGTGCCAATTGCC
R:
CCCCACTGCTGAGGAGAATCA
Band lengths:
246-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]