GgaEX6042534 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:21397871-21399802:+
Coord C1 exon
chr7:21397871-21397934
Coord A exon
chr7:21399297-21399438
Coord C2 exon
chr7:21399596-21399802
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTGATTTTTACATAGGCA
3' ss Score
7.49
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CTCATTTCTACATTTTGGAAGGACAAAGAGATGCCCTACTTTGTGGTAATAGCTCTGATGCAGG
Seq A exon
GCAGTGTCCAGAGGGATATATATGTGTGAAAGCTGGTAGAAATCCCAACTATGGTTACACAAGTTTTGACACTTTCAGTTGGGCTTTTCTGTCACTCTTTCGGCTAATGACTCAGGACTTCTGGGAAAACCTGTATCAACTG
Seq C2 exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTTGTTCTGGTGATTTTTCTGGGCTCATTCTATCTGATCAACTTGATCCTGGCTGTGGTTGCCATGGCCTATGAGGAGCAGAACCAAGCAACTATGGAAGAAGCAGAGCAGAAAGAGGCAGAATTTCAACAGATGTTAGAACAGCTAAAGAAGCAGCAAGAAGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.8=100)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=PD(0.4=1.4),PF119333=DUF3451=PU(0.9=2.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGGACAAAGAGATGCCC
R:
TGTGCTTCTTCTTGCTGCTTCT
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]