RnoEX6017118 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51597080-51600450:-
Coord C1 exon
chr3:51600387-51600450
Coord A exon
chr3:51598001-51598142
Coord C2 exon
chr3:51597080-51597286
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTCTTTCTTTCCCAGACA
3' ss Score
9.85
5' ss Seq
TTGGTATGG
5' ss Score
5.53
Exon sequences
Seq C1 exon
GTCACTTTTATGTCTTGGATGGACAAAAAGATCCTTTACTCTGTGGAAATGGCTCCGATGCAGG
Seq A exon
ACAATGTCCAGAAGGGTACATCTGTGTGAAGGCTGGACGAAACCCCAACTACGGCTACACAAGCTTTGACACCTTCAGCTGGGCCTTCTTGTCCCTGTTTCGACTCATGACTCAGGACTACTGGGAGAATCTTTACCAGTTG
Seq C2 exon
ACATTGCGTGCAGCTGGGAAAACCTACATGATATTTTTCGTCCTGGTAATTTTCTTGGGCTCGTTTTATTTGGTGAACTTGATCCTGGCTGTGGTGGCCATGGCCTATGAGGAGCAGAACCAGGCCACACTGGAGGAGGCTGAACAGAAGGAGGCAGAGTTTCAGCAGATGCTGGAGCAACTGAAGAAGCAGCAGGAGGAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.116
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.8=100)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=PD(11.6=44.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTGGATGGACAAAAAGATCCT
R:
TCCTCCTGCTGCTTCTTCAGT
Band lengths:
254-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]