GgaEX6042534 @ galGal4
Exon Skipping
Gene
ENSGALG00000011040 | SCN3A
Description
sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr7:19418383-19420314:+
Coord C1 exon
chr7:19418383-19418446
Coord A exon
chr7:19419809-19419950
Coord C2 exon
chr7:19420108-19420314
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTGATTTTTACATAGGCA
3' ss Score
7.49
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CTCATTTCTACATTTTGGAAGGACAAAGAGATGCCCTACTTTGTGGTAATAGCTCTGATGCAGG
Seq A exon
GCAGTGTCCAGAGGGATATATATGTGTGAAAGCTGGTAGAAATCCCAACTATGGTTACACAAGTTTTGACACTTTCAGTTGGGCTTTTCTGTCACTCTTTCGGCTAATGACTCAGGACTTCTGGGAAAACCTGTATCAACTG
Seq C2 exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTTGTTCTGGTGATTTTTCTGGGCTCATTCTATCTGATCAACTTGATCCTGGCTGTGGTTGCCATGGCCTATGAGGAGCAGAACCAAGCAACTATGGAAGAAGCAGAGCAGAAAGAGGCAGAATTTCAACAGATGTTAGAACAGCTAAAGAAGCAGCAAGAAGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(7.8=100)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=PD(11.6=44.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGGACAAAGAGATGCCC
R:
TGTGCTTCTTCTTGCTGCTTCT
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]