GgaEX6044054 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12025174-12027083:+
Coord C1 exon
chr8:12025174-12025286
Coord A exon
chr8:12026118-12026186
Coord C2 exon
chr8:12026850-12027083
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTTTTACCACACAGGTT
3' ss Score
8.92
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGGAATATTGGATTGATCCCAACCAGGGTTGTTCTGGAGACTCCTTCAAAGTGTATTGCAATTTCACAGCAGGTGGGGAAACTTGCATCTACCCAGATAAGAAATCTGAAGGA
Seq A exon
GTTAGAATTTCATCTTGGCCAAAAGAGAATCCAGGATCTTGGTTTAGTGAATTTAAGCGTGGCAAACTT
Seq C2 exon
CTTTCATATGTGGATGTTGAAGGCAATTCCATTAATATGGTTCAAATGACATTCCTTAAACTACTGAGTGCCTCTGCCAGACAAAATTTCACATACAACTGCCATCAGTCTGTAGCTTGGCATGATGCCTCAACTGACAGCTATGACAAAGCACTAAGGTTCTTAGGATCAAACGATGAAGAGATGTCTTACGACAACAATCCTTACATCAAAGCGCTTCTTGATGGCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'68-70,'68-69,70-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGGTGGGGAAACTTG
R:
GCCAAGCTACAGACTGATGGC
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]