RnoEX6011187 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:217049410-217052999:+
Coord C1 exon
chr2:217049410-217049522
Coord A exon
chr2:217050925-217050993
Coord C2 exon
chr2:217052766-217052999
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTATTCTCTCCCAACAGGTA
3' ss Score
13.51
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGAATATTGGATTGATCCTAACCAAGGCTGCTCAGGTGATTCCTTCAAAGTTTACTGTAATTTCACAGCTGGTGGTGAGACGTGCATCTATCCAGACAAAAAATCTGAGGGA
Seq A exon
GTAAGACTTTCATCTTGGCCGAAGGAGAAACCAGGAAGTTGGTACAGTGAATTTAAGAGAGGAAAACTG
Seq C2 exon
CTTTCCTATTTAGATGTGGAAGGCAATTCCATCAATATGGTACAAATGACATTCCTGAAACTCCTGACTGCCTCTGCCAGACAAAACTTCACCTACAATTGCCACCAGTCAACTGCTTGGTATGACGTCTTATCAGGAAGTTATGACAAAGCACTTCGGTTTCTGGGATCTAATGATGAGGAAATGTCCTACGAGAACAACCCACACATCAAAGCTTTGTATGACGGCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'73-74,'73-73,74-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACCAAGGCTGCTCAGGTG
R:
GCAGAGGCAGTCAGGAGTTTC
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]