MmuEX6073543 @ mm9
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:113914991-113920122:+
Coord C1 exon
chr3:113914991-113915103
Coord A exon
chr3:113916136-113916204
Coord C2 exon
chr3:113919889-113920122
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCCCATTCATTTCCAACAGGTA
3' ss Score
11.58
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGAATATTGGATTGATCCTAACCAAGGTTGTTCAGGTGATTCCTTCAAAGTTTACTGTAATTTCACAGCTGGTGGTGAGACATGCATCTATCCGGATAAAAAATCTGAGGGA
Seq A exon
GTAAGAATTTCATCGTGGCCAAAGGAGAAACCAGGAAGTTGGTACAGTGAATTTAAGAGAGGAAAACTG
Seq C2 exon
CTTTCATATTTAGATGTGGAAGGCAATTCCATAAATATGGTACAAATGACATTCCTGAAGCTCCTGACTGCCTCTGCCCGGCAAAACTTCACCTACAATTGCCATCAGTCAGCTGCCTGGTATGACGTATTATCAGGAAGTTATGACAAAGCACTTCGATTTCTGGGATCAAATGATGAGGAAATGTCCTATGAGAACAACCCACACATCAAAGCTTTGTATGATGGCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966-'68-69,'68-68,70-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTGGTGGTGAGACATG
R:
TACGTCATACCAGGCAGCTGA
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: