GgaEX6044076 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11978076-11981936:+
Coord C1 exon
chr8:11978076-11978120
Coord A exon
chr8:11980805-11980858
Coord C2 exon
chr8:11981883-11981936
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTGCTTATATACTAGGGA
3' ss Score
6.26
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGTACTTCAGGCAATGATGGTCCGCCTGGCCCACCAGGTGAAAGG
Seq A exon
GGACCACAAGGGCCTCAAGGACCTGTTGGATTTCCTGGACCAAAGGGACCCCCA
Seq C2 exon
GGGCCACCTGGTAAAGATGGCTTGCCTGGACATCCAGGACAGCGGGGTGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.0=66.7)
A:
PF0139113=Collagen=PU(28.3=94.4)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGGCAATGATGGTCCG
R:
GTCTCACCCCGCTGTCCT
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]