RnoEX0022760 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216979266-216988094:+
Coord C1 exon
chr2:216979266-216979310
Coord A exon
chr2:216983936-216983989
Coord C2 exon
chr2:216988041-216988094
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAACGTTTATGTGTTTTCAGGGC
3' ss Score
8.96
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTACATCAGGTGGTGATGGCCCTCCTGGCCCACCAGGCGAAAGG
Seq A exon
GGCCCTCAAGGACCTCAAGGTCCAGTTGGATTCCCTGGACCAAAAGGCCCCCCT
Seq C2 exon
GGCCCTGCTGGGAAAGATGGGCTACCAGGACACCCTGGACAACGTGGAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'41-43,'41-42,42-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGTGGTGATGGCCCTC
R:
AGTCTCTCCACGTTGTCCAGG
Band lengths:
94-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]