GgaEX6044076 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10241019-10244879:+
Coord C1 exon
chr8:10241019-10241063
Coord A exon
chr8:10243748-10243801
Coord C2 exon
chr8:10244826-10244879
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTGCTTATATACTAGGGA
3' ss Score
6.26
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGTACTTCAGGCAATGATGGTCCGCCTGGCCCACCAGGTGAAAGG
Seq A exon
GGACCACAAGGGCCTCAAGGACCTGTTGGATTTCCTGGACCAAAGGGACCCCCA
Seq C2 exon
GGGCCACCTGGTAAAGATGGCTTGCCTGGACATCCAGGACAGCGGGGTGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'49-49,'49-48,50-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.5=6.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGGCAATGATGGTCCG
R:
GTCTCACCCCGCTGTCCT
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]