MmuEX6073572 @ mm10
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:114138921-114147823:+
Coord C1 exon
chr3:114138921-114138965
Coord A exon
chr3:114143044-114143097
Coord C2 exon
chr3:114147770-114147823
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTAATGCTTTTTGTTTTCAGGGC
3' ss Score
9.7
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTACTTCAGGTGGTGATGGCCCTCCTGGTCCTCCAGGCGAAAGG
Seq A exon
GGCCCTCAAGGACCTCAAGGTCCAGTTGGATTCCCTGGACCAAAAGGCCCCCCT
Seq C2 exon
GGCCCTGCTGGGAAAGATGGGCTACCAGGACACCCTGGGCAGCGTGGTGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966-'36-52,'36-42,45-52=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCAGGTGGTGATGGCC
R:
TCTCACCACGCTGCCCAG
Band lengths:
96-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types