GgaEX6045340 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:234701-243288:+
Coord C1 exon
chr8_random:234701-234872
Coord A exon
chr8_random:237625-237731
Coord C2 exon
chr8_random:243168-243288
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTGTTTATTTAGGTA
3' ss Score
10.34
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTGTTGAAATGGGTTGAAGAAGCAGTTCAAGCCTCCAAAGTACATCTCTTGTCTACAGACCATTTGACCATGGCTGTAAATACTTGGAAGATCCCCTTTGATCCAAGTCTGAAAGAGGTTACAGTGTCCTTGAGTGGTCCTTCACCAGCAATTGAAATTCATGATCCATTAG
Seq A exon
GTAAACAGATTAGCAAAGGATTGGGACTGAACGAATTGCTGAATATCCACAACTCCGCAAAAGTAGTAAATGTCAAAGATCCAGACCCTGGAACATGGACAATAAAG
Seq C2 exon
ACATCGAGCAGCGGAAGGCACTCTGTTCGGATCACGGGTCTCAGCACTATTGAATTTCGAGCTGGGTTTTCCAAGAAGTCAACGTTAGACTTCAAGAAAACATCCAGCAGACCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'7-13,'7-8,10-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(3.3=6.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGCAGTTCAAGCCTCCA
R:
ACGTTGACTTCTTGGAAAACCCA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]