RnoEX6044592 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68178674-68188683:-
Coord C1 exon
chr13:68188512-68188683
Coord A exon
chr13:68186189-68186295
Coord C2 exon
chr13:68178674-68178794
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGTTTTGTCTTCCAGGGA
3' ss Score
12.79
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGTTGAAGTGGGTGGAAGAAGCGGTGCAGGCCTCCAAGGTTCACCTCTTATCCACCGACCATTTGGAACACGCTGTAAATACTTGGAAAATTCCTTTTGATCCCAGCCTCAAAGAAGTTACTGTGTCCCTGAGTGGCCCTTCTCCCGTGATTGAAATTCGCAATCCTTTCG
Seq A exon
GGAAGCTGATAAAAAAGGGGTTTGGCTTGAATGAGCTGTTAAATATCCATAACTCTGCCAAGGTGGTGAACGTCAAAGAGCCCGAAGCTGGAATGTGGACAGTGAAG
Seq C2 exon
ACCTCCAGCAGTGGAAGGCATTCTGTTCGCCTCACCGGTCTCAGCACTATCGATTTCCGAGCTGGCTTTTCTCGAAAGCCCACGCTGGACTTCAAAAAAACAATGAGCAGACCCGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(2.3=6.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGTGGGTGGAAGAAGCG
R:
CGAGAAAAGCCAGCTCGGAAA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]