HsaEX6035573 @ hg19
Exon Skipping
Gene
ENSG00000143341 | HMCN1
Description
hemicentin 1 [Source:HGNC Symbol;Acc:19194]
Coordinates
chr1:185878469-185891631:+
Coord C1 exon
chr1:185878469-185878640
Coord A exon
chr1:185880806-185880912
Coord C2 exon
chr1:185891511-185891631
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTTATGTTCTGTCTTTCAGGGA
3' ss Score
12.39
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GTATTAAAATGGGTAGAAGAAGCAGTACAGGCCTCCAAAGTTCACCTTTTATCCACAGATCATTTGGAACAGGCTGTAAATACTTGGAGAATTCCTTTTGATCCCAGCCTGAAAGAGGTCACTGTGTCTTTGAGTGGGCCTTCTCCAATGATTGAAATTCGCAATCCTTTAG
Seq A exon
GGAAGCTGATAAAAAAGGGATTTGGCCTGCATGAGCTATTAAATATCCATAACTCTGCCAAAGTAGTGAATGTGAAAGAGCCAGAGGCTGGAATGTGGACAGTGAAG
Seq C2 exon
ACCTCAAGCAGTGGAAGGCACTCTGTTCGCATTACTGGCCTCAGTACTATTGATTTCCGAGCTGGCTTTTCTCGAAAGCCCACCCTGGACTTCAAAAAAACAGTCAGCAGACCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143341-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(2.3=6.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAGTACAGGCCTCCAA
R:
TTTTTGAAGTCCAGGGTGGGC
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)