MmuEX6028051 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152656817-152666660:-
Coord C1 exon
chr1:152666489-152666660
Coord A exon
chr1:152664151-152664257
Coord C2 exon
chr1:152656817-152656937
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTTTTGTCTTTCAGGGA
3' ss Score
13.02
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGTTGAAGTGGGTGGAAGAAGCTGTGCAGGCCTCCAAGGTTCACCTCTTATCCACCGATCATTTGGAGCACGCTGTGAATACTTGGAAAATTCCTTTTGATCCCAGCCTCAAAGAAGTTACTGTGTCCCTGAGTGGCCCGTCTCCCGTGATTGAGATTCGCAATCCTTTCG
Seq A exon
GGAAGCTGATAAAAAAGGGATTTGGCCTGAATGAGCTGTTAAATATCCATAACTCTGCCAAAGTGGTGAATGTCAAAGAGCCTGAAGCTGGCATGTGGACAGTGAAG
Seq C2 exon
ACCTCCAGCAGTGGAAGGCATTCTGTTCGTATCACCGGTCTCAGCACTATTGATTTCCGAGCTGGCTTTTCTCGAAAGCCCACGCTGGACTTCAAAAAAACAATGAGCAGACCCGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'7-5,'7-4,8-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PD(2.3=6.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGGGTGGAAGAAGCTG
R:
CGAGAAAAGCCAGCTCGGAAA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: