GgaEX6048424 @ galGal3
Exon Skipping
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60659300-60661865:+
Coord C1 exon
chrUn_random:60659300-60659416
Coord A exon
chrUn_random:60661458-60661606
Coord C2 exon
chrUn_random:60661713-60661865
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCCCCACCCTTACAGCTG
3' ss Score
10.45
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCAGTCTTTGGCGTTACATCCGAGCCAGTGCCTCCTATACCCCCTACCTGCCTCCGCTCTGCGACCCCAAGGACAGCCACTGCCTCGTGGACGGCTGCTATGTTAACAATGTCCCAG
Seq A exon
CTGACATCGCCCGCAACATGGGTGCCAAGACGGTGATTGCCATCGACGTGGGCAGCCAGGACGAGACGGACCTGTGCAACTACGGGGACAGCCTGTCGGGCTGGTGGCTGCTCTGGAAGCGCCTCAACCCTTGGGCTGAAAAAGTCAAG
Seq C2 exon
GTGCCCGACATGGCAGAGATCCAGTCGCGGTTGGCGTATGTGTCGTGCGTGCGGCAGCTGGAGGTGGTGAAGTCCAGCTCGTACTGTGAGTACATCCGACCCCCGATCGACCGCTTCAAGACGATGGATTTCGGCAAGTTCGATGAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
PF0173417=Patatin=PD(2.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGGCGTTACATCCGAGC
R:
ATCCATCGTCTTGAAGCGGTC
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]