RnoEX0067730 @ rn6
Exon Skipping
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2091628-2097068:+
Coord C1 exon
chr12:2091628-2091744
Coord A exon
chr12:2095416-2095717
Coord C2 exon
chr12:2096959-2097068
Length
302 bp
Sequences
Splice sites
3' ss Seq
CTGACCTCCTGGCTCTACAGCGG
3' ss Score
8.07
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCTCCCTGTGGCGCTATGTGCGTGCCAGCATGACGCTCTCGGGCTACCTGCCCCCGCTGTGCGACCCGAAGGATGGGCACCTGCTCATGGATGGTGGCTACATCAACAACCTGCCAG
Seq A exon
CGGATATCGCCCGCAGCATGGGGGCCAAAACGGTCATTGCCATCGACGTGGGAAGCCAGGATGAGACGGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAACGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCCTGGCGTATGTGTCCTGTGTGCGGCAGCTGGAAGTTGTCAAGTCTAGTTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTAT
Seq C2 exon
GGGAGGAGTCGGATTGCTTGACAGAGTATGAGGAAGATGCGGGACCTGACTGCTCAAGGGATGAAGGGGGCTCTCCTGAGGGTGCCAGCCCTAGCACTGCCTCAGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977_MULTIEX1-29/31=28-C2
Average complexity
C3*
Mappability confidence:
99%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.919
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=PU(88.6=97.5)
A:
PF0173417=Patatin=PD(2.4=4.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGTGGCGCTATGTG
R:
ACCTCTGAGGCAGTGCTAGG
Band lengths:
225-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]