BtaEX6038332 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17643429-17646941:+
Coord C1 exon
chr7:17643429-17643545
Coord A exon
chr7:17645341-17645642
Coord C2 exon
chr7:17646825-17646941
Length
302 bp
Sequences
Splice sites
3' ss Seq
CTGACTCCCTGGCCCCACAGCGG
3' ss Score
8.8
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCTCCCTGTGGCGATACGTGCGTGCCAGCATGACTCTCTCGGGCTACCTGCCGCCGCTGTGCGACCCCAAGGATGGGCACCTCCTCATGGACGGCGGCTACATCAACAACCTGCCAG
Seq A exon
CGGACATCGCCCGCAGCATGGGTGCCAAGACAGTCATCGCCATCGACGTGGGGAGCCAGGACGAGACAGACCTTAGCACATACGGGGACAGCCTGTCTGGCTGGTGGCTTCTGTGGAAGCGGCTGAATCCCTGGGCAGACAAGATCAAGGTTCCAGATATGGCAGAGATCCAGTCTCGCCTGGCCTACGTGTCCTGCGTGCGACAGCTGGAGGTTGTGAAGTCCAGCTCCTACTGTGAGTACCTGCGCCCACCCATCGACTGCTTCAAGACCATGGACTTCGGGAAGTTCGACCAGATCTAT
Seq C2 exon
GATGTGGGCTACCAGTATGGATCGACCGTCTTTGGGGGCTGGAGCCGGGGCGACATCATTGAAAAGATGCTCACAGACCGGTGGTCTGCCGACCTGAACGAGAGCCGCCGTGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-'41-41,'41-39,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PD(0.1=0.0),PF0173417=Patatin=FE(86.7=100)
A:
PF0173417=Patatin=PD(2.6=4.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGTGGCGATACGTG
R:
GCGGCTCTCGTTCAGGTC
Band lengths:
224-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]