DreEX6032909 @ danRer10
Exon Skipping
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45179800-45188072:-
Coord C1 exon
chr1:45187956-45188072
Coord A exon
chr1:45183595-45183743
Coord C2 exon
chr1:45179800-45179952
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGCACTCTAATGCCCTTCAGCGG
3' ss Score
3.98
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTCCCTGTGGCGCTATGTCAGGGCGAGCATGACCCTTTCCGGGTACCTGCCACCCCTCTGCGACCCTAAAGATGGAAACCTGCTCATGGATGGAGGATACATCAACAACCTGCCAG
Seq A exon
CGGACATTGCTCGTACTTTGGGCACAAAAACTGTCATTGCCATTGATGTGGGCAGCCAGGATGAGACTGATCTCTGTAACTACGGTGACTGTCTTTCTGGCTGGTGGCTGCTATGGAAACGAATCAACCCGTGGGCAGAGAAAGTGAAG
Seq C2 exon
GTACCTGACATGGCTGAAATCCAGTCTCGTTTGGCCTACGTGTCCTGTGTAAGGCAGCTGGAACTAGTCAAGAAGAGTGCATACTGCGAGTACATTCGCCCACCCATCGACCGCTTTAAGACCATGGATTTTGGGAAATTTGATGAAATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773-'35-38,'35-37,36-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(23.4=100)
A:
PF0173417=Patatin=PD(2.4=8.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGTGGCGCTATGTCAG
R:
CCATGGTCTTAAAGCGGTCGA
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]