GgaINT0008809 @ galGal3
Intron Retention
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9855077-9856651:+
Coord C1 exon
chr15:9855077-9855220
Coord A exon
chr15:9855221-9856531
Coord C2 exon
chr15:9856532-9856651
Length
1311 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
3' ss Seq
GAACATTTCACTTTCTGCAGAGC
3' ss Score
6.9
Exon sequences
Seq C1 exon
ATGGAGCAGGAAATGACGCGGTTGCACCGGAGAGTGTCAGAGGTGGAGGCTGTACTTAGCCAAAAGGAGGTGGAACTGAAAGCCTCTGAGACCCAGCGATCCCTCCTGGAGCAGGACCTGGCCACCTATATCACAGAATGCAGT
Seq A exon
GTGAGCCCTTATCCCAGTCCTTTCCCCTCTGAAGGCCTGAAATCTGGTGGTCTTCTCTCCCATCGTGGTTTCAGTAGTGTACTTGATGGAGAGAAGATAATATGCGAGAGGCTCTCTGTAGAAAGTGGAGCACTGAATTGTTTGCAGAGGCTTGTTTGATAATTCTATTCAACTTTGTTTCGTGTTCGTTTACTTAAAACATATAGAAATAACTACTCTTCTGGTCTTCCTGATGTGTGTATGCATATGTATTTGCCTTACTAGCTGTGCTAGAATGTACTTGAGTTTGGTTTCTCATCCAGAAGAGGATGAGGGCCTAATCAGAGGTCTTCAAGGACAAATAAGATGATTAGGAGACAATGGTGTTGTTGCCTGAATGTGTGGTACTCAGAGTTCAGACAGATCAAGTTCCCCAGCAAAATATCAGGGATGATGCTAGGACAGCTGCTATTGTTCAGATAGAACATAAAAATGAGGCCTTAAAACCACGTCTTCAAAGATCATTTGGCGCTTTTCATGAGAGTAGGAATGTCTGCCCAGTTGTCCTGGCAAGGTTCCAGTGAAGGTATTCTCATTCTGGTTAATAGTCTTTGTGTTAAGTTGAAGTTATTAGTCCGTTTCTTCTCTCCTGGCAAGGAAAACAATCCAGATAATGAACTGTTTTAGGGAATTGAGGAGCATTTCTGGTGGGTTTGTATGTTGGAAAACATGTCTTAGAACAGAGTGATTTTTTTTCCTATAGTAGTTTCTAGCAGGTAAATAAATAGTGTTTGCCTCTTTCTGATGAAGATTACTACACAGTTGGTAGGAGGACTACTGGTCTGTTGAAATTTGCAGGTAAAATATGTGTTGAGAATCTGGAGCAGTTCTGTCCTTTGGAAAAGTTTAACAATGATTAAAGGATTTAACTCACTTAAGAGCAACTAGAAAAAATGAATGAAATTGTTAGTAATGTGAAGATGAAGGATTGTATCTAGGTTATGAATTAATAGTACTAGATAAAAAATGGATAAATGCTGTCAATAATAGATGCCTTTTGTGATCTGTTTTTTTCCTCCAAGGCTGATGTGAGGAAGTGGAGATTTGAACTATGATTTCAGTGTAGTAAATGTTATTTGTAAAATGGGCTGATTCTATCCAGATAAAAGACCCTAGTCATGATTTTTTTTTTCTAATGGTTCCTTCATTGATGCCTTGGTTTTCTTCTGATGCTTCGCTACAGTCAAGGAGGAATTTGCATAGTTAAAGATCTTTATTATACAACCATCTGAAAAAACAAAGACTGTATTTTGAACATTTCACTTTCTGCAG
Seq C2 exon
AGCTTAAAGCGAAGCCTGGAGCAGGCACGGATGGAGGTGTCTCAGGAAGATGATAAGGCACTACAGCTACTTCATGATATCAGAGAGCAAAGCCGAAAACTGCAAGAGATCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354:ENSGALT00000011895:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0396210=Mnd1=FE(44.8=100)
A:
NA
C2:
PF0396210=Mnd1=FE(37.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCAGGAAATGACGCG
R:
TGTTCTTTGATCTCTTGCAGTTTTCG
Band lengths:
263-1574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]