HsaINT0035520 @ hg38
Intron Retention
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119782518-119784051:-
Coord C1 exon
chr12:119783908-119784051
Coord A exon
chr12:119782638-119783907
Coord C2 exon
chr12:119782518-119782637
Length
1270 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
3' ss Seq
AAAATTTTTGCTTTCTGCAGAGC
3' ss Score
8.26
Exon sequences
Seq C1 exon
ATGGAGCAGGAAATGACCCGGTTACATCGGAGAGTGTCAGAGGTGGAGGCTGTGCTTAGTCAGAAGGAGGTGGAGCTGAAGGCCTCTGAGACTCAGAGATCCCTCCTGGAGCAGGACCTTGCTACCTACATCACAGAATGCAGT
Seq A exon
GTGAGCCTTCCCTGAAGCCCCCTTCCCTTGGAGGTGGCACTTCCTGTTGTGTGTGTCTCATCCTGTTTCATGATGGCTCCATGAGGCACATCACAGCCAATGGCAGAGAGTAGAGAGAGGGAGAGCACAAAAGCAAGATCTGTGTTTTGCAGAGTAGTGAGAGCCAGGCGTAAGGTCCCCAAGAAATGAGATTGGACTCATTTCCAGCAGAAAGTGCAGGTAGACGGCTGGTACCATGGAGTCTGGAGATGGGAGTAATCCATCTTTGCCGCAAGTTGCAAAAGATCTTAACATCTCCCATCCCAGCCTCTGTGGTCTGCGTTGTGTCTGACATGAGCAGCCTTGAGAACCAGACTCCCAACTATGTACAAGAAAACTTACTTTCAATCTTCCTGACATCAAATTTTCCATTGGCCAGAACCAGTGTAGTGACAAGAAAATAGCCTTGAAAACCCAGACCCTCTGTCATTATTTACCATGTGACTTTCATTTTTTCTTTCCTTCACAAGAGTAGACTGTCTTCTTCTCCATTGTCTTGTTAAATTTTTCATTCAGGTGTTTTTTAATGTGCCCAATTAAACAGTCTCAAGAAGTTGAATCACACATTTCTAAAGTTTTTTTCACAAGGGAGAGGAAATCTATAGAACGTGGCTGATTAAGAATAACTGCTATGTTTCCATTCCAGACTTGGCTGCCTTTCAGTGGTGGGTGAAGTTATTCAGCTATGTATTTCAGATATAGATTTCAGTGCCATTGAAGCATTAAGGGATTCTTATGGATGAAAGGTGTCCAGGAAAAATAAGCCAGGAGGTAGAAATAGACCACTTGGAGTCTTAAATGACAACTGGGCAGAGGATATGAAGTCATTGCTACTTTGAAAGAGGCATATGTACTTTAGGGCCCACAAATAACTGTAGAAAACACTTTGTAGCTATCCACATGGTGGCTGTAATAGCTACTGGGTCTTAATAGGTTTTAGTCCTGAACATGCAAGTAAGTATCTCCTAGGACAGGTAGATGGTGGCAGGAGACAGGCTGATGCAGTTTCCGGCTGGATCCCTAAGGTCACCAGGTTGAGATGATGTTTCTTGAACCAAGGGGTTTTACAGGATGGAAACCGGAGTCGGCAACCAACTGGAAGTTGTGAACTGTGGTCCGTCACTCGAAACTGTCCTGGTGTCTGCGAAGCAGCTTGCAGCTCTCTTAATGAGTCTTTTCAAACAAAGCAGGATCCACAGGGCATCCCTATTAAAATTTTTGCTTTCTGCAG
Seq C2 exon
AGCTTAAAGCGAAGTTTGGAGCAAGCACGGATGGAGGTGTCCCAGGAGGATGACAAAGCACTGCAGCTTCTCCATGATATCAGAGAGCAGAGCCGGAAGCTCCAAGAAATCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966:ENST00000261833:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=NA C2=0.398
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCAGGAAATGACCCGG
R:
GCTCTTTGATTTCTTGGAGCTTCC
Band lengths:
262-1532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development