RnoINT0036613 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46412111-46413633:-
Coord C1 exon
chr12:46413490-46413633
Coord A exon
chr12:46412231-46413489
Coord C2 exon
chr12:46412111-46412230
Length
1259 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
3' ss Seq
AAAATCTTTGCTTTCTGCAGAGC
3' ss Score
8.07
Exon sequences
Seq C1 exon
ATGGAGCAGGAAATGGCCCGGTTGCATCGCAGAGTGTCAGAGGTGGAGGCTGTGCTTAGTCAGAAGGAGGTGGAGCTGAAGGCCTCTGAGACTCAGAGATCCCTCCTGGAGCAGGACCTTGCCACCTACATCACAGAATGCAGT
Seq A exon
GTGAGCCTTCCCCAAAGCCCCCTGCCCTCGGAGGGAGGCGGCACTCCCTGTCGTGTGCGTCTCATCCTGTTTCATGACAGCTCCATGAGGCGCACCACAGCCAATGGCAGAGTAGAGAGAGACCGAGTGAGTGGAAGGGCAGGCGGCTGCCAGAGGTGGCGAGAGCAGGCAGGAGGCCCCCTAGCAGTTGGGCTGGAACTGGCACTCGGCAGGCAGCCAGAGTGGGCTGCCGAGCTCCACCAATCCCAGAGACGGGGATCCAGGGTCACCGAAGCCTTCTTCAGAGGGGCCTGTCATTTGTCCCAACCTCGCTGGTCTATGCTGTGTCTGGCACCATCAGCTTTGAGGGCTAAACTCCCAAATTCGTGTCAGAAAACATAATTCGAATCTATCCGGAATGAGTTCTTATTCCCTTAGAAGCACTGTGGCCCAGGAGACTTGGCTTCTGAGACCCAGGCTCTGTCATTATTCATGCGACTCCATTTTTTTTTCCTTTCCTTCACAAGAGTTGACTGTCTCCTTCATTGTCTCGTGGAGTTTTCATTCAGGTGTTTTCTACTGTGCCCAACGAAACAGTCGTAGAGGTTGAATCACACATTTATAAAGGTTTATTTTTTTTTTCCTCACAAGGGAGAGGAAATCTATAGAATGTGGCTGATTAAGAGTAACTGCTATGTTTGCCTTCCAGACTTGGCCGCCTTTCAGTGGTGGGTGAAGTTTACAGCTGTGTATTTCAGATGTCTCCCTCAGTGCCATGGATGCCTGGGATGGCGGGGGTAGGGGGTGAGCGGTGTGCGGGATGATGGATCATAGGTGTCTAGGAGGCGGGTACCCAACTGGACTCTGAAATGACAGCTGGATAGACCGTGAAGCTGTTGCTTCCTTTGAAACAGACGTGCGTACCTGAGAATCCGGAAAAGCATTCACATTCCCAGAACACACTAGATAGTCATGGAGGAGGTGGCTGTTCTAACAGACACAGAATCTTACTGGTTTTCAGTCCTGAACATACAAGTGAGCCAGGAGAAGTAGACAGTGCCAGGCTCCGCCCCCTGTAAGGTTGTGAGGTTGCGACGACATTTCTTCCGCCAAGTAGCTCTTACAGGGTGAAAACTGGAACCGGCAACGGCTGCAAGTTGTCTACTGTGGCCCATCACCCGAAAGTATCCCGCCCGGTGTCCCAGCAGCTCTCCTAATGAGCCTTTTCAACCAGAACAGGATCCATGGGGCATCCCTGTTAAAATCTTTGCTTTCTGCAG
Seq C2 exon
AGCTTAAAGCGAAGTCTGGAGCAAGCGCGGATGGAGGTGTCTCAGGAGGATGACAAAGCTCTTCAGCTTCTCCACGACATCAGAGAGCAGAGCCGGAAGCTCCAGGAGATCAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCAGGAAATGGCCCG
R:
CTGCTCCTTGATCTCCTGGAG
Band lengths:
264-1523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]