GgaINT0008809 @ galGal4
Intron Retention
Gene
ENSGALG00000007354 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr15:9590615-9592189:+
Coord C1 exon
chr15:9590615-9590758
Coord A exon
chr15:9590759-9592069
Coord C2 exon
chr15:9592070-9592189
Length
1311 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
3' ss Seq
GAACATTTCACTTTCTGCAGAGC
3' ss Score
6.9
Exon sequences
Seq C1 exon
ATGGAGCAGGAAATGACGCGGTTGCACCGGAGAGTGTCAGAGGTGGAGGCTGTACTTAGCCAAAAGGAGGTGGAACTGAAAGCCTCTGAGACCCAGCGATCCCTCCTGGAGCAGGACCTGGCCACCTATATCACAGAATGCAGT
Seq A exon
GTGAGCCCTTATCCCAGTCCTTTCCCCTCTGAAGGCCTGAAATCTGGTGGTCTTCTCTCCCATCGTGGTTTCAGTAGTGTACTTGATGGAGAGAAGATAATATGCGAGAGGCTCTCTGTAGAAAGTGGAGCACTGAATTGTTTGCAGAGGCTTGTTTGATAATTCTATTCAACTTTGTTTCGTGTTCGTTTACTTAAAACATATAGAAATAACTACTCTTCTGGTCTTCCTGATGTGTGTATGCATATGTATTTGCCTTACTAGCTGTGCTAGAATGTACTTGAGTTTGGTTTCTCATCCAGAAGAGGATGAGGGCCTAATCAGAGGTCTTCAAGGACAAATAAGATGATTAGGAGACAATGGTGTTGTTGCCTGAATGTGTGGTACTCAGAGTTCAGACAGATCAAGTTCCCCAGCAAAATATCAGGGATGATGCTAGGACAGCTGCTATTGTTCAGATAGAACATAAAAATGAGGCCTTAAAACCACGTCTTCAAAGATCATTTGGCGCTTTTCATGAGAGTAGGAATGTCTGCCCAGTTGTCCTGGCAAGGTTCCAGTGAAGGTATTCTCATTCTGGTTAATAGTCTTTGTGTTAAGTTGAAGTTATTAGTCCGTTTCTTCTCTCCTGGCAAGGAAAACAATCCAGATAATGAACTGTTTTAGGGAATTGAGGAGCATTTCTGGTGGGTTTGTATGTTGGAAAACATGTCTTAGAACAGAGTGATTTTTTTTCCTATAGTAGTTTCTAGCAGGTAAATAAATAGTGTTTGCCTCTTTCTGATGAAGATTACTACACAGTTGGTAGGAGGACTACTGGTCTGTTGAAATTTGCAGGTAAAATATGTGTTGAGAATCTGGAGCAGTTCTGTCCTTTGGAAAAGTTTAACAATGATTAAAGGATTTAACTCACTTAAGAGCAACTAGAAAAAATGAATGAAATTGTTAGTAATGTGAAGATGAAGGATTGTATCTAGGTTATGAATTAATAGTACTAGATAAAAAATGGATAAATGCTGTCAATAATAGATGCCTTTTGTGATCTGTTTTTTTCCTCCAAGGCTGATGTGAGGAAGTGGAGATTTGAACTATGATTTCAGTGTAGTAAATGTTATTTGTAAAATGGGCTGATTCTATCCAGATAAAAGACCCTAGTCATGATTTTTTTTTTCTAATGGTTCCTTCATTGATGCCTTGGTTTTCTTCTGATGCTTCGCTACAGTCAAGGAGGAATTTGCATAGTTAAAGATCTTTATTATACAACCATCTGAAAAAACAAAGACTGTATTTTGAACATTTCACTTTCTGCAG
Seq C2 exon
AGCTTAAAGCGAAGCCTGGAGCAGGCACGGATGGAGGTGTCTCAGGAAGATGATAAGGCACTACAGCTACTTCATGATATCAGAGAGCAAAGCCGAAAACTGCAAGAGATCAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354:ENSGALT00000011895:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCAGGAAATGACGCG
R:
TGTTCTTTGATCTCTTGCAGTTTTCG
Band lengths:
263-1574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]