GgaINT0009275 @ galGal3
Intron Retention
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5867355-5867918:-
Coord C1 exon
chr15:5867913-5867918
Coord A exon
chr15:5867480-5867912
Coord C2 exon
chr15:5867355-5867479
Length
433 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CTTGTTCTTTAATATCACAGATT
3' ss Score
7.14
Exon sequences
Seq C1 exon
CAAGAG
Seq A exon
GTTTGTTCCACTTCTTGCCTTACTTTTATTTTATTTGCAATGATAATTTGCCAAGCATTACTTGATTACTGCCAGCAGTACTTCTCCTGTGCTGTCTGCTGATCTCTGAGTGGCTCGGACCGCTTCAGGAAATGCCGTGTGAGTGCACTGTGCTGCCTCGCTGCCACCTCTGGAATAGCTCAGGGGGTGACCTGGCAGCCCCTGGTGCACCCACTTGAGCAGCAGGTCCAGAGGAACGGAGATGCACTTCTGATCAGAATTACACTGCTGGCTTTCGTGCTGAAACAGTAACATTAGAAAAAGAGCTTGATCTGTTGGTGGTGGGTTGAGACCTATTAGCATTTGTCATTTTGAGGGCCATTCCTGTGGTGTTTGCTTTCTGTGGACATGCAGTCCTCAACCTTCTGACTGTGCTTGTTCTTTAATATCACAG
Seq C2 exon
ATTGACTTCCTGAACTCAGTGATAGTAGATCTGCAAAGGAGAAATGAAGAATTAAACTTGAAAATACAGAGAATGTGTGAAGCAGCCCTCAATGGCAATGAAGAAGAGACAATCAACTATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467:ENSGALT00000007110:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]