HsaINT0036363 @ hg38
Intron Retention
Gene
ENSG00000130779 | CLIP1
Description
CAP-Gly domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr12:122274038-122278203:-
Coord C1 exon
chr12:122278154-122278203
Coord A exon
chr12:122274163-122278153
Coord C2 exon
chr12:122274038-122274162
Length
3991 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTTTTTTTTTAACAAATCAGATT
3' ss Score
5.35
Exon sequences
Seq C1 exon
GTAATACAGACACTCAGGCAGACGAGGATGAAAGAGCCCAGGAGAGTCAG
Seq A exon
GTAATGTTCCTGCCTTATTGCTTTACTTTCTTGCTGTTTTTCAAAATCATTGAATCTTTTCGTTTATTTTCCTTCTCATTTGATGCCTTTTGTATCATTTAGTCTTTTGAATTGGTAATGCATTCCTCTAGTCCAAACATTAAACAGAATTAAAAATATATACATTAAATGTCTTCCTCCAAACCTTCTCTCTCTTCTGCTCAGTTCCCAACCCTGCAAACAGTTAATTACTGTTATTTGTGTCTTTCCTTTTCAGAGATTTTTTAAAGTGTGTATACAAGCCAGCACTAATACAGTCTTCCCTCCCTTTTTTTTTTTTAACATAAATAATGGCATACTACATAAACGGTTCTGCACTTATTTTTTTTATAGCTATGTAGTGTTCCATTACGTGGATTTACTATAATTTAGTCAGTTCCCTATTGGTTGACAATGACACTGGGATGTTTCTGATCCTTTGGGTGTATTATAAACAATGCCGTAAGGAATTATCTTGGGCAGCTATCATTTTATATATTAGTATTTCTGCAGGATGAATTCCTAGAAGTAGAATTGCTCTGTCAAAGGGTTTGTTACTCATCTGAACCTTAAAAAGACTGGTTTCTTGAAAACTCAGTCTCTTAAAGCGAAAATTAACAAAACAACTTTAGTTTTAAACTAAAAATGGGATTAGGCCAGGAATGGTGGCTTATCCCTGTAATTCCAGCACTTTGGGAGGCCAAGGTGGGATGATTGCTTGAGCCCAAAAGTTTGAGACCAACCTGGACATAGCGAGACCTCATCTCTACAAAAAAAAAAAAACAAAAAAAACAAAAAACAATCCTGCAGCCTGAGTGACAGAGCAACACCCTGTCTCAAAACAATTACTTAATTAAAAAAAAGTTTTTAAGGGCCTGGGCCAGGTGCAGTGGCTCACGCCTATAATTCCAGCTTTTTGGAAGGCTGTGGCAAGCGGACTGTTTGAGATCAGGAGATCGAGACCAGCCTGAGCAACAATGGCAAGACCCCATCTCTACAAAAAATAAAATTAGTTAGGCATGGCGCCATGCTCCCATAGTCCCAGTTACCCCAGAAGCTGAGGCAGGAGGATCACTTGAGTCCAGAAGGTTGAGGCTGCAGTGAGCCATGATCATGCCACCGCACTTAGGCCTGACTGACAAAGCAAGAACCTGTCTCAGAAAAAAAAAAGGTGGGGTGGGGGGCCCGGGCACAGCAGCTCACACCTGCAATCCCAGCACTTTGGTAGGCCAAGGTAGGCAGATCGCTGGAGCCCGAGACCAGCCTGCGCAACATGGGCACTCCAAGCTGGGTGACAGAGCAAGGCCCTGTCTCAAAACAAACAAAAATTTGTAAAAAGGGATTATATAAAGGCAAACTATTCTGTACTTGGAAATATAATTGTATATAGCAACAAACATCTGTCTTTTAATTTTAATATACTTTGTATGTATTAGTCATGTTCAAAATTCAAAAGTACAAAAGCCACATTTTATATTTAAATAAAAGAAAAACTCACCTTGAGATGTTAGTTGCCAGACACCTCCTTTGAGGGGCACAAAACGATTCAACACTGTACAAACTTACCATGGATTAGCATTGTCCTCTTTGTATGTCTACTGGGCTTAATAACTAACAGTGTCTTCTCTTCCCCCTTCCTTTCTGCTTCGGTTTGTTTCATCTGCTGCTGACAACACTTTTCTTCCAATCAGCAAATGGTTCGTTTCATGTTTCCTAATTTGCGTGCACACGTGTGTGTGTGTGTGTGTGTGTGGTTTCCCACTATACTTATGTCCATTTTGTGGCTTTTTCTTCTTCCTGAAATGGAGCTCTTAACACGATAATGACTTAGAAAATGCACGTTGAGAAGTGAAGGTAGACTCAGTAGGTCTGCCTTCAGAGGTGGCCTCCATGATGCTGGGATATGCTGCAGAGAAAGACTGCAGTGATTGCTAACTTTGTTCATAACTCCCCAGCAGGAGAAAAAGACCAAATATTTCTTTAAAAAGTAAAATATTTATGTATATGTGTGTGTATATCTATATATATTTTAAATATTGTAAAGTGGGATCTTTCAGTTTAGAGAAATGAGACTTTTCATTATTTGTAGAAGGAAGAAATTTTTTGTTTTTAAGTCAAAATGCCCTTTGATTGAAAGGAAATGTTCAGGATAAGAGCGGTCCCTCCTGTTGGCCATCTTGTTGTCCCCACTGCCCCAGCTCTTGGCATGGGCACTCTCCCTCTGGGTGGTACCTGAACACCGCCTTGTTGGCGTGCCTGGCTGTCTCTCCTAGGTTGGGAGGGAGCTTTAGCCTTCTCCATTTTCCCTGAGGACATGTTTACTTATTGCTCCACCATTATCAGTCAGTTGATAAATGAGAGTCTGAAGGAAATTTCCATGTGACTTTTTCAAATCTGCCGAACAGAAAAGTCCTGGATGGATTGTAGAGTTTAATGGAAGAACTAACCTTTTTATGCATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTATTTTTTTCTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGACTGCAGTGGCGTAGTCATGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGCGAGTTTCCAGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTAAGCCACCACACCCAGCTAATTTTTGTATTTTTACTAGAGACAGGGTATCACTATGTTGGCCAGGTTGGTCTTGAACTCCTGACCTCAGATGATCCGCCTGCCTCTGTCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCACGCCTGGCCAATATTTTTTATGTGGTAGAATGAAAACAAACTTGTGCCCATATATTCAGAAATATAAGATTATGACTTCTGGAGAATGCAAGATTTTTTTCTCCTATTTAAAAAAATGTTTCTTATATTTTTTCATGAATCAATAGCACTCCACCAACCCACAGATTTAGATGTTTAGGAATAATTTCAGCTGGGTACAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGTTTGAGTCCATCCTGGACAATATGATGAAACCCCGTCTCTATTAAAAATACAAAAATTAGCTGGGTTTGGTGGCACGTGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGGTCGCAGTGAGCCGAGATCGAGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCATAAATAAATAAAATAATTAATTAATTCATGGCCTGGCACCGTGGCTCACACATGTATTCCCAGCACTTTGGGAGGCCAAGCCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCATCCTGGCCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATCAGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCTATTCAGGAGGCTGAGACAGTAGAATTGCTTGAACCCAGGAGACAGAGGCTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACAAAACAAAACAAATGAAGTTTACCCATGTTATACCTAGAAACATTCAATGAAGTGTAATTTAAATTTTTTTTTAAAATATAAAATAGCATCTCCTCAGTAATGAACATTTGAAGAAATCTGAAAGGTGTGAGGGGGTAAAAGAAACTGCCATAGCCTTACCACCTAGACATGGCCTCATTTAAGTTCAGCTCTTTACTCACACAATCTCAGCATGCCTGTCCTCCGGGAGAGTGAAAAGCATGGGTTCCTAATAGCCGCTGTTGGCCCCTTCTGCACACTTTGCCGCCAGAGCTTAAAGGTATAAACTTCATGACTTCTTGATGCTCCAGCTTATATATATTCTTGACATTTTACACATTTTTTTTTTAACAAATCAG
Seq C2 exon
ATTGATTTCCTAAATTCAGTAATAGTGGACCTTCAAAGGAAGAATCAAGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAATGGGAACGGGGATGACCTAAACAATTATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779:ENST00000302528:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.592
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development