HsaINT0036363 @ hg19
Intron Retention
Gene
ENSG00000130779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:10461]
Coordinates
chr12:122758585-122762750:-
Coord C1 exon
chr12:122762701-122762750
Coord A exon
chr12:122758710-122762700
Coord C2 exon
chr12:122758585-122758709
Length
3991 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTTTTTTTTTAACAAATCAGATT
3' ss Score
5.35
Exon sequences
Seq C1 exon
GTAATACAGACACTCAGGCAGACGAGGATGAAAGAGCCCAGGAGAGTCAG
Seq A exon
GTAATGTTCCTGCCTTATTGCTTTACTTTCTTGCTGTTTTTCAAAATCATTGAATCTTTTCGTTTATTTTCCTTCTCATTTGATGCCTTTTGTATCATTTAGTCTTTTGAATTGGTAATGCATTCCTCTAGTCCAAACATTAAACAGAATTAAAAATATATACATTAAATGTCTTCCTCCAAACCTTCTCTCTCTTCTGCTCAGTTCCCAACCCTGCAAACAGTTAATTACTGTTATTTGTGTCTTTCCTTTTCAGAGATTTTTTAAAGTGTGTATACAAGCCAGCACTAATACAGTCTTCCCTCCCTTTTTTTTTTTTAACATAAATAATGGCATACTACATAAACGGTTCTGCACTTATTTTTTTTATAGCTATGTAGTGTTCCATTACGTGGATTTACTATAATTTAGTCAGTTCCCTATTGGTTGACAATGACACTGGGATGTTTCTGATCCTTTGGGTGTATTATAAACAATGCCGTAAGGAATTATCTTGGGCAGCTATCATTTTATATATTAGTATTTCTGCAGGATGAATTCCTAGAAGTAGAATTGCTCTGTCAAAGGGTTTGTTACTCATCTGAACCTTAAAAAGACTGGTTTCTTGAAAACTCAGTCTCTTAAAGCGAAAATTAACAAAACAACTTTAGTTTTAAACTAAAAATGGGATTAGGCCAGGAATGGTGGCTTATCCCTGTAATTCCAGCACTTTGGGAGGCCAAGGTGGGATGATTGCTTGAGCCCAAAAGTTTGAGACCAACCTGGACATAGCGAGACCTCATCTCTACAAAAAAAAAAAAACAAAAAAAACAAAAAACAATCCTGCAGCCTGAGTGACAGAGCAACACCCTGTCTCAAAACAATTACTTAATTAAAAAAAAGTTTTTAAGGGCCTGGGCCAGGTGCAGTGGCTCACGCCTATAATTCCAGCTTTTTGGAAGGCTGTGGCAAGCGGACTGTTTGAGATCAGGAGATCGAGACCAGCCTGAGCAACAATGGCAAGACCCCATCTCTACAAAAAATAAAATTAGTTAGGCATGGCGCCATGCTCCCATAGTCCCAGTTACCCCAGAAGCTGAGGCAGGAGGATCACTTGAGTCCAGAAGGTTGAGGCTGCAGTGAGCCATGATCATGCCACCGCACTTAGGCCTGACTGACAAAGCAAGAACCTGTCTCAGAAAAAAAAAAGGTGGGGTGGGGGGCCCGGGCACAGCAGCTCACACCTGCAATCCCAGCACTTTGGTAGGCCAAGGTAGGCAGATCGCTGGAGCCCGAGACCAGCCTGCGCAACATGGGCACTCCAAGCTGGGTGACAGAGCAAGGCCCTGTCTCAAAACAAACAAAAATTTGTAAAAAGGGATTATATAAAGGCAAACTATTCTGTACTTGGAAATATAATTGTATATAGCAACAAACATCTGTCTTTTAATTTTAATATACTTTGTATGTATTAGTCATGTTCAAAATTCAAAAGTACAAAAGCCACATTTTATATTTAAATAAAAGAAAAACTCACCTTGAGATGTTAGTTGCCAGACACCTCCTTTGAGGGGCACAAAACGATTCAACACTGTACAAACTTACCATGGATTAGCATTGTCCTCTTTGTATGTCTACTGGGCTTAATAACTAACAGTGTCTTCTCTTCCCCCTTCCTTTCTGCTTCGGTTTGTTTCATCTGCTGCTGACAACACTTTTCTTCCAATCAGCAAATGGTTCGTTTCATGTTTCCTAATTTGCGTGCACACGTGTGTGTGTGTGTGTGTGTGTGGTTTCCCACTATACTTATGTCCATTTTGTGGCTTTTTCTTCTTCCTGAAATGGAGCTCTTAACACGATAATGACTTAGAAAATGCACGTTGAGAAGTGAAGGTAGACTCAGTAGGTCTGCCTTCAGAGGTGGCCTCCATGATGCTGGGATATGCTGCAGAGAAAGACTGCAGTGATTGCTAACTTTGTTCATAACTCCCCAGCAGGAGAAAAAGACCAAATATTTCTTTAAAAAGTAAAATATTTATGTATATGTGTGTGTATATCTATATATATTTTAAATATTGTAAAGTGGGATCTTTCAGTTTAGAGAAATGAGACTTTTCATTATTTGTAGAAGGAAGAAATTTTTTGTTTTTAAGTCAAAATGCCCTTTGATTGAAAGGAAATGTTCAGGATAAGAGCGGTCCCTCCTGTTGGCCATCTTGTTGTCCCCACTGCCCCAGCTCTTGGCATGGGCACTCTCCCTCTGGGTGGTACCTGAACACCGCCTTGTTGGCGTGCCTGGCTGTCTCTCCTAGGTTGGGAGGGAGCTTTAGCCTTCTCCATTTTCCCTGAGGACATGTTTACTTATTGCTCCACCATTATCAGTCAGTTGATAAATGAGAGTCTGAAGGAAATTTCCATGTGACTTTTTCAAATCTGCCGAACAGAAAAGTCCTGGATGGATTGTAGAGTTTAATGGAAGAACTAACCTTTTTATGCATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTATTTTTTTCTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGACTGCAGTGGCGTAGTCATGGCTCACTGCAACGTCCGCCTCCTGGGTTCAAGCGAGTTTCCAGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTAAGCCACCACACCCAGCTAATTTTTGTATTTTTACTAGAGACAGGGTATCACTATGTTGGCCAGGTTGGTCTTGAACTCCTGACCTCAGATGATCCGCCTGCCTCTGTCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCACGCCTGGCCAATATTTTTTATGTGGTAGAATGAAAACAAACTTGTGCCCATATATTCAGAAATATAAGATTATGACTTCTGGAGAATGCAAGATTTTTTTCTCCTATTTAAAAAAATGTTTCTTATATTTTTTCATGAATCAATAGCACTCCACCAACCCACAGATTTAGATGTTTAGGAATAATTTCAGCTGGGTACAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGTTTGAGTCCATCCTGGACAATATGATGAAACCCCGTCTCTATTAAAAATACAAAAATTAGCTGGGTTTGGTGGCACGTGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGGTCGCAGTGAGCCGAGATCGAGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCATAAATAAATAAAATAATTAATTAATTCATGGCCTGGCACCGTGGCTCACACATGTATTCCCAGCACTTTGGGAGGCCAAGCCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCATCCTGGCCAACATGGCAAAACCCCGTCTCTACTAAAAATACAAAAATCAGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCTATTCAGGAGGCTGAGACAGTAGAATTGCTTGAACCCAGGAGACAGAGGCTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACAAAACAAAACAAATGAAGTTTACCCATGTTATACCTAGAAACATTCAATGAAGTGTAATTTAAATTTTTTTTTAAAATATAAAATAGCATCTCCTCAGTAATGAACATTTGAAGAAATCTGAAAGGTGTGAGGGGGTAAAAGAAACTGCCATAGCCTTACCACCTAGACATGGCCTCATTTAAGTTCAGCTCTTTACTCACACAATCTCAGCATGCCTGTCCTCCGGGAGAGTGAAAAGCATGGGTTCCTAATAGCCGCTGTTGGCCCCTTCTGCACACTTTGCCGCCAGAGCTTAAAGGTATAAACTTCATGACTTCTTGATGCTCCAGCTTATATATATTCTTGACATTTTACACATTTTTTTTTTAACAAATCAG
Seq C2 exon
ATTGATTTCCTAAATTCAGTAATAGTGGACCTTCAAAGGAAGAATCAAGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAATGGGAACGGGGATGACCTAAACAATTATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779-CLIP1:NM_002956:23
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.899 A=NA C2=0.595
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)