GgaINT1009604 @ galGal4
Intron Retention
Gene
ENSGALG00000004467 | CLIP1
Description
CAP-Gly domain-containing linker protein 1 [Source:RefSeq peptide;Acc:NP_990273]
Coordinates
chr15:5811542-5812660:-
Coord C1 exon
chr15:5812611-5812660
Coord A exon
chr15:5811673-5812610
Coord C2 exon
chr15:5811542-5811672
Length
938 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ACTGTGCTTGTTCTTTAATATCA
3' ss Score
-11.05
Exon sequences
Seq C1 exon
GTGACATAGCTGCTAATCTACTTCAAGATGAAAGTGCAGAAGATAAACAG
Seq A exon
GTATTTGATCTGAAACGTCAGCAAGCTAAAACAGCAGTATGCAGAGTGAAATCTTCCCAAATACAGTTCTTAGCAGATTTTGGAAATCAGGACTATGATAGACAGCTTTTTGTTTTCACCTTCTGCTTCTGAGGGGAAATACCAATGGTTGGAATAACATGAGGAAGCAAGCAGGAGAACAAGAGGTAGAAACTAGCTGCTCTGTTACCATATGATTCTAACAGATTTAGGAAAAATATGTATGAAAGGGTTCAGTAATTGTAATGGACATGTAGAAGAAAGCAGTGCAACAGGCTGCCTGTGACAGCAAAGGCCTAGGATGCGTGGTTGGAATAGCAGCGCTGTTAAATCACTGGAGTTGGTCATACTGATTAACAGTCTTTACTAGTGACATAGTCTGTACAGAGCTCAGAAGCAGTGCAATTAACCAATTAAGTAACCACTAATTTCTTTTTTTTTCCCTCCCTGAATCCACCTGCTGATGACAATGCTTTCTTCTGATCAGCAAGAGGTTTGTTCCACTTCTTGCCTTACTTTTATTTTATTTGCAATGATAATTTGCCAAGCATTACTTGATTACTGCCAGCAGTACTTCTCCTGTGCTGTCTGCTGATCTCTGAGTGGCTCGGACCGCTTCAGGAAATGCCGTGTGAGTGCACTGTGCTGCCTCGCTGCCACCTCTGGAATAGCTCAGGGGGTGACCTGGCAGCCCCTGGTGCACCCACTTGAGCAGCAGGTCCAGAGGAACGGAGATGCACTTCTGATCAGAATTACACTGCTGGCTTTCGTGCTGAAACAGTAACATTAGAAAAAGAGCTTGATCTGTTGGTGGTGGGTTGAGACCTATTAGCATTTGTCATTTTGAGGGCCATTCCTGTGGTGTTTGCTTTCTGTGGACATGCAGTCCTCAACCTTCTGACTGTGCTTGTTCTTTAATA
Seq C2 exon
TCACAGATTGACTTCCTGAACTCAGTGATAGTAGATCTGCAAAGGAGAAATGAAGAATTAAACTTGAAAATACAGAGAATGTGTGAAGCAGCCCTCAATGGCAATGAAGAAGAGACAATCAACTATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467:ENSGALT00000007113:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]