RnoINT0037325 @ rn6
Intron Retention
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38447580-38450414:+
Coord C1 exon
chr12:38447580-38447629
Coord A exon
chr12:38447630-38450286
Coord C2 exon
chr12:38450287-38450414
Length
2657 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTTGAAAAAAAAAAAAAAACCAG
3' ss Score
-15.75
Exon sequences
Seq C1 exon
GTAACACTGATGTTCAGACAGAAGAGGATGAGAGAGCCCAGGAGAGTCAG
Seq A exon
GTAATGCTCCTCTCTTAGTGCTTCTGCTGTCTGCTGTCCCCCGTCACTAGGTATCTCGAGAGTGTAGCGCTGAGCATTAAAGTGTACACGGTGAGAAGCCTTTCGGTCTCCGCTGCTCATTCCCCACATCCCGACACTGATCCCGTGTCCTGCCTGCTGCAGGCAGTGGGCCTTTGTGGTTCGGTAGCTGTGGTGTGAGACCGCGCATCCTGCAGTTCTTGGAAGGCCGAGGTGGGAGGAGGATCAGTGGAGCCATGGAGTCTGAGATCAGCCTGGGTAGCACAGAGGAGCCTGCCCCTCACAAGCACACTCTAGGACTTCAAGTTTTGCCCTTTTTTTTTTTTTTTCAAGAAAGGATTTCTCTGTGTAGCCCTGACTCTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCTAAGAGAGCCGCCTTCCTCTGCCTCTCTACTTCAGGGATTAATGTGTCTACTACTTGACTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTGAGACACGGGGCTTTATGGAGCCCTAATTGGCCTCGAACTTTGCTGCTTCTGCTGCCCTGCCTCCCAGTCACTGAATCACAGTTGGGCAGCACCGGCACAGCTACCTCCCTTCACAGCTTTTTGCTTTGTTTTAAGATTTATTTGTATGAGTACACTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTAAACCACTGAGCCGTCTCTCCAGCCTCCGTTATTGTTGAACTTTAGTAGCATACCCCATAATCCGTTCTGTACTTGTTACCTTTTCTTTAGCTGTGTACTACTCCATTATGTGGCTGGACCACAGTTTAGTCAGTTCCCTTTGGAGGACAGGACACTGTGATCTGTCTAACCCTGTGGGTATCTATGAAAATCCAGTGCTATAAGGAATGCCCTTAAACAGCTTTCAGACTCCGACTGACCCAGCATTAGCTTTGTCTCTTAGCCTCTCACAGGCATAGAACAGAATTAACATTGTTTTTTCTCCCCCCTTCCTTTCTGCTTTCATCTGTTTCTGCTGCTGCCGCCAACACTTTCCCTCCCATCAGCAAATGGTTTGTTTTTTGCTTCCTAATTTGTGTACATTGTGCGTGTGACTGTGTGTATGGTTCCCTTGTCCCTGGAACGGAGCCCTACAGAATGACTTAGAAGATGCAACCGGAAAGTCAGATGTGAGGGCTGGAGAGATGGCTCAGTGGGTAGGAGCGGTAGTTGCTCTTACAGAGGACTGGCTTGAGTTCCCAGCACCCATGTGGTAGTCCACAACCATCCTGAACTCCAGTGCCAGGGAATCCAGCTCCCCCCACCCAACTCCCAACCCCCGACCTCCACAGCCACACAGGCAGAACACTCATACACGTAAATCTGGAAGAAAGAAGAAAGCGAGTCAGGTGTGGTAGGATATCCATGAGACACCAGCATCCGGGAGGCCGAGGCAGCAAGGTCTATTAATTTGCCATAGCTACAGTGTAAGATCCTGTCTTAGGAAAGGAAGACAGTTCACGGTTAATCTGGTTCTGTGTTTTGTCTGTCTGAGACAGGGACTAACTATAGAATAGACCAGACTAGCTTTAAAGGAGCAGACAGCAGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAACGGTGTACGTCACGCCTAATTTAATAGTGAGTCTAAGGCCAGCCTGGGATACTTACAAGAGTCTATTCAAGAAAGAAAGACAGATAAAAGAAAGAGAAGAAGGAAGGACAGCTAAAGTGTGTGAATCGAGACAGAGACATTTCAATGTACAGAAATGAAACCTTTTACTTGTAAAAGAGGGAAGAATGTTTTGTTTTCAGAGAACCCTTAAAAGACATGAAGTCTTCAGGACATGTTACTTTTTGATGGTCACTTTGTTGTCTTTGCTGCCAGCTCTTTCTAGAACACGTGCTCTTCCTGTGTATGTGTGTGTGCCCGTGTGTGTGGGGGGACGACGGACATGTCCCACCTCCTCAGCAGAAAGAGAGCTTGGCCTTCTCTATTAAGCCCTATATCTTTACCAAAGATTCCCTGTACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAAGGGAAAATAAACCAGGTATTCAGAAATGTGAAATTTTGACTGTGGGCAGTGTAAGGTGTTTTGTTTTCTTGAAACACTAGCGGTGGCATTTCACTAGTCCACACATCAGTGATTTTAAGTGCAGTGTCCTTTGTCTGAACAAAGTGAGGTTTATCCGTTCACAGCTGCAGAGACTCAGTGACATGACTTTAAAGCGTCTCTTGATACAGAACAGTACCTTAGTAACAAACACTGAGAGATAGAAAAGGGAAGAGAGGAACCTGCTTCCGGCCTTCACCTAGCCATCACCTCAGGTCACCGGGCAGCCTCAGCATCCCTGCTCTGCTCTGACACGTTTGCAGCTGTAGTGTGAGCACATCCTTCCCCACCTCAAGATATTGCAGCCGTGAGGGCGTAGACGTTCCCACAGCTCACTGCTTCTTTTTTCTTTGAAAAAAAAAAAAAAAC
Seq C2 exon
CAGATTGATTTCCTCAACTCGGTAATAGTGGACCTTCAAAGAAAGAACCAAGACCTCAAGATGAAGGTGGAGATGATGTCTGAAGCTGCGCTGAACGGCAACGGGGAGGATCCGAACAGTTACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247:ENSRNOT00000001685:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.601
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]