GgaINT0023629 @ galGal4
Intron Retention
Gene
ENSGALG00000004532 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr11:9245583-9248160:+
Coord C1 exon
chr11:9245583-9245697
Coord A exon
chr11:9245698-9248055
Coord C2 exon
chr11:9248056-9248160
Length
2358 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GATTGTTGTTGTCTCTTTAGATG
3' ss Score
8.74
Exon sequences
Seq C1 exon
GAAGTAAGTCTTCAGTTCAGAAACTGTACAGATGTGATGTATGTGACTACACCAGCACAACTTACGTTGGCGTACGAAATCACAGACGAATCCATAACTCTGATAAGCCATACAG
Seq A exon
GTAAGTGTCTCAGTTATTGCTAACTAATGCTAGGCTCGTAGACTGCTTGTTTTAACTAAAAAGAATGTGTTGCTTATGGAATTTTGAACATATTGTTAAAGAATGTCGATGCAGTAATTTTACTGCAGCTTTGAAGAAGCCACAGTTACTGTTTGACTCAAACTAGGTAATTAAATTTTGCTATCATCTCCAGGATGTTAGGTGAAAACAGCTTGTTTTCAGTTTGAAGCATCCAGATGTGCAAAGGGAAGCAAATACCTTATAATACTCAACTTTGCCCCCTAGTAATAATATATTTAGCAGACTCCTTTAACACTTTATTTTGGATTTGCCTTCTTGCAAAATGTTCTCCATTGCCATTAAGCTTTGTTTTAAAGCAGTAAAGCAAACAGCAAGATACACAGTTCTTTTTGAAGGAGGTTGGAGACAAGGTGTGTTCATAATGTATTGGCTTATTCAGTTGGGCAGAGTTCTGCCCATTGTCATGTTCCCAGCCCCCTTAGCTTTTATACAGGTTTCAAACAGTATTAATGCATTTGGGATCAGATACAGCTTTTCTATAAAGGATGTTACGTGGATATATGTAGAAACTTTGATATCTAAAATTGGCTGTAATACTGTATAGTTCAGTTCCTCAGCAGAAAAAATAAAGCATATTACATGAACTCCTGCAATTTAAATCAGCTTATTTGCTGTGGATCTCTGTCCCTCTCTAGTGGCTAGAAAATAGATGTAATACAATTTTTATCTTTTTAGCACAAATTCTGGAAACTCAACACCTGAAAATGCTGAGCTCAGTCTGGGCCTTTCTTTTTTGGCTAAATTGTAAAACAGAGGATGTTTTATTTTGATTTGTGCATTATAATGATATCCAGTATCACTGCCAAAAATTTGCAAGATGTTTGCTCAGAGAACAAGTGTGCAATATAAACAGATTTTTCTTTTTCTCAGAATCTTCCCTACTGCCATTATTTGTTACTTGATGGGGTTGGAACAGCAGACCTGTAGTGTCTTGCTAACCTCTGAGTTAGTGCTAGCTAGCCTGTTTGATATAGGAACCACTGAAATTTTTCCACTGGTGATATAGACTGATCCATACTGAATTTAAGCCTACTGATCCAGTTTGCTTTTCTTATCATTTTTGCACAAGCCCTTTAGATACATTTGCAGACCTGGCAGGATACTCAGGCCACAGCCTAAAAACAGTAAAGATCCAGTAGTCGTGGTATTTCTCATTTTGAAACATGTATTCCTCAAGCCATTCATAATGTCAGATAGCAACCTAACTACATTGCAGCTATTTTTATACCCACACAAATACTTTTTTACTTATTTAACAAAAATTGCTGGAAATGAAACTGTATATATAGCCTCTAATGATGCATTTTTGTAGATTTGATACCTCCTGGATTTTAATACTGTGCAATTAAATCCTTTCAATAATAAAGTGACTAATTTCAAGTTAAATGTCCTGCAGTCTCAATCTTTTTCACCCTGTAAACCAAATTTAGTAATGTTTGAACATTTTACCATTTGGAAATAGAAACAACTGAAATCCTGATAAATATGTGAAATTTTAGCTGATCCTGATGACTTCCATTAGATCTATTTTAATGTTATATATAGGAAGCTTATGTAGTAATATATTGATATTTATGCATAGCTTAGTACTTTGTGAAGGACTCTGGAATCCAAATCCAGGGATCCTGATTGAGATCAGAACTGTTTTATGTATTTTTGTGTAAAGATATCATGACAGCAGTCAAAAAAACCCAAAATCTGAGTGTGATGAGACACACTTGTCTTAGGGCACTTGAATCTAGATGTGTTGATCTAGTCCGTGACTTTTACTTCAGTTATAATGCTCTGAAACTTAGGTGTTTTATTACTTAATTGGCAGTTTGGCTTTTATAATGTCACGAGAAATGTGTATTATTTCATAAATTAGAACACGTTCTTAAGGAACAATACTCACTTCTAAGTGCATTGTCTTCCTATAGTTTTTATGGTCATATTCTGCTTTTGCACAGTATAGCCAAGCAACTTACATCATGACTGCTTCAAGAACATCACTTACAGATCATAATGCTTATCAGCTTCAGAAGAGGCCCATAAGGTGGACATGAGGACAGAACATGATCTGTATGCATAGTGATTCTAGCTCAAAGTTGGAGACTTTTTGGGATTGCAAAAGGTTCTCATGGTCCAAAAATTAAAGGTTAAATGTCATCACTTAGACTTCTGTTAATGTTGTTAGCCTTCAATTGCAGTCTTTCCAGTCTTTCCTTTGCTTTCTCATAGATTTTATTTCTGGAATAGTGCTAGCAGTTAATTGTCAGATTGTTGTTGTCTCTTTAG
Seq C2 exon
ATGTCGAGTATGCGACTTCGCCACCACAAATATGAATAGTTTGAAATGCCATATGAGGCGTCACCCCCAGGAGCATCAGGCAGTGCAGCTAATGGAACAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532:ENSGALT00000007217:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.278
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(57.7=38.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(38.5=27.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]