GgaINT0031671 @ galGal3
Intron Retention
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24963620-24969840:-
Coord C1 exon
chr9:24969640-24969840
Coord A exon
chr9:24963878-24969639
Coord C2 exon
chr9:24963620-24963877
Length
5762 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTCTCCTCCCGGTGTTGCAGGTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
CCCATGTTCTCCGTTGCGCCCAGCCTAGCCACCAATGCCTCGGCTGCCTTCAACCCCTACCTGGGGCCCGTGTCCCCAGGGCTGGTGCCGGCGGAGATCCTGCCCACCGCGCCCATGCTGGTGGCGGGCAACCCTGGTGTCCCGGTGCCTGCTGCCGCCGCTGCTGCTGCGCAGAAGCTGATGAGGACGGACAGGCTGGAG
Seq A exon
GTAGGAGCCCAATGGTAGCTGCTCCCGCAGTGCCAGTCACTGCGTGTGCCGGAGAGAATGTAGTTCTCTGGCAAAAAGCAAACCGCAAGCGTCACTTCGGCTGATGGTGTCCTGCCTTGGCTGAGGGCAGGGAGAGCGCGCAGCCCCGTGCCGTGCTTGCAGCTCTGCTCCTGGCCCTGCAGCCCAGAGGGAAGCGGAGCACTGAGAGTGTCCTGAGGCTGCATTAATGTGTGCGCAGCAGCTGCTAACGGGCACGGGCACAGGGCCTGCTGCAGCTGCCGGCTGGGAGCCGCTTCCAGCTCTGCCGTGTTCTTGCTCTGGGCACATGCTGCTGGCATTGCCCGGTGCCTCTGTGTGCTCCTTCGCTGCGGCCCTGGCAAGCGCTGGTCCTCGCTGGCTCTCGCTCCCCCTTGCCCTGAATCTCTCTGACCTGAAAGTCTTGGCCGTGTCCTTGGTACCATATTGGCCTTGTGCTCAGAGCCAGCACCGTGCCATGCACTCGTGGTGCTGGGTGGTGCAGGTGGGTGACATCCCAGCAGGCAGTGTGACGTTACGTGCTGCTGTGTGTGGTGCCCTCGGTGCCAGTGCAGATGTGAAGAAGCACCCAGCAGTCCCCAGGTACCCAGCGACTCGTGGCACCACAGGTGTCCGAGGGCATGGAGTGAGCAGTTCTGGAGCTGGTCCCTGCGTGCGGTGGGAGCAGTGGCAGGGATCTGTTTTAGAGTGCGGCCAGCTGTAGTGGTAGTGCCTTTCTAACTGCCTAGGCATGTGCGGCGATAGAGTGTGCGTCTGCTGATGGGGGCCATGGGCGCCTTTTGCTCGGTGGTGTCGCCTTGGCAAGCAGCAGGCTGTGAGCTGCCCGGCACCGCTGTTCCTGGACGTCACATCCACACAGGTGCCCTCCTGCAGGGTCACAGTGCTTCCCAATGGAGTTGGGGTGTCAAAGGAAAGAACTCCTTGGAGCACATTCAGGTTGCAGGAGGAGCAGCCTCCTCGGGCAGGCACGTCATCCACTGTAAGAGATTTCTCCTCAGCCAGCTCTTTATTTCAGAGGAGACTTATCAGAAAGGGATTAAAATAAAATGCTGTCAGATAAACTCCTAAATAAACCACATTGGGCTCAGAAATAAAACTTGGAGATGGGCATTTCCAAGGACCCTGCCTGCAGCCACAGGTACAGGGGAAGGGGCTGCAGCAGGTGAGCCACTGCCGGCAGGCCCAGCCCTCTGCTGGCAGCATGTTCTGTCTGTACAGTTCAGAGGTGCTGAGCTGCTAGGCCACTCTTCTCAACGCAACAGGGGGCTGCGAGAGTGTTACTCTCACAGTTAGAAAAAGGTCTGCAAAAATACCTGAAATCAGACAAATTCCCTCTCATTTCATGACATCCCGGCCTGCCAGCACCTGGCAGCTTCTCTGCTGTGATTGCATTTATCTCAGCTGGCTGTGCATCTCAGTGATGCCCTTGTCCTTGAAGGAGGGCTGTCCCTCCCCCTCTGCCCCCAGCCCCTGCCTCCCTATGAGGCCTTCGTGTGGCCCTGCCCTCACCATGCAGCTCCCTGAGCCTCCTGCTCCCCTCGAGCTGTGCAGTTCTGTGACCAGGAGCCTGCCCCAGTGCAGCCGCTCTGCAGCTCCATGCCTCTCCCACACACGTGCAGTGCCTGCTGTGGGCAGGGGCTGCTCCTCCTCCTTTTTTTTTTGCCTCGGTAAATGTAGTTTCAGTAGTCTAATATGTAGGGAATGTGGCAGTGCCGTCCAGTGTAGTGGCTGTTTAATCTGAGCTATCTAGATTTAGTGTACGAATGACAAATCAGCACATATTTTTTATGAGCAGTAAATCATTGTTATGTATTTTATTGATTAGAAAAATGCAGAGCGTATTGGGAATATTTTACCTTCCAGCAGCTGGCACGCTGCAAGCAACGGGTGGCTTCTGCTCCCTGCACTGCCACCGTGCTGCCATTTGTTCTTCCTGACTGCAGAGCTTTATATGGTTGGCTCTCTCCTTTGGAATGAGCTGTCCCATGAAAAAATAACCATGTGATGTTAGCATCTAATCTTGGAATATGATTTGTTCTGGTTAGAATTTTAAATACTTATTTTCAAGACTGATGTACTCAGTTGTTAATTCAGCTGGCACACGTGTTCTGGGCTACTGAATCACACTGTCCCACAGCAGAGAGCTCTTTGCAAACATGCCCAGGGCTCAGGAAGGCAGCAGGACTCAGTGGTGTCCTGAGCAGTTGTTGGTGCTGGTGGGGCTGGTCTAGTGCCTGTTCCTGCAGCGTGGCTCCTTCCAAAGCTTTTGGGGCGCACTGCCCATGCTGATGGTGAGCAGATGTGCAGGTGGTCATCAGCCACTCACTGAAGGCATTGGGCTCAGGGTGGAAATTTCCTGGGTTCAGAATTTCCTTCAGCTCCCCTCACATTCCTGCCCAGCCATAGAGATCCTGAACAGAAGTTGGCTCTTCTGGTAAGCAAAAAGAGAGCCCTCAAAGGAGGTGATGTGGGGGAACAAGGAGCCACTCACCTCCCTGTTTGTTCACAAGCACGTTCCCTTCTGAGCACTATCATTTTCTATTCAAAGTATTCGAGAATCAGAACAGCCACAGTCAAGCTGCTGTTTCCTGCATGCTTCACAGATGCCAGATTTTTCTGGATAAAAGCAGCTTAAAAGTTCTCAGAGACTTGCAGATACTCAGGACATGCTGGATGACAGTGTAGCCCTTCTGATAAGCTCAGTGCAGGAGGAGGCGAAAGCACAGGCTGCTGGGGGTGGGCTCGCACCGCGCCGTCCGGGTGAGATGCAGTTCCCTTGGCTGGCAGCTGGAGTCCTGCGGCTCCCTGCCAGCGTCTTAGGTTCTGTTTGTGCTTCTTAGCTTACCGAGTGGAAAATGATGATGCTAATTACAGAGCTACTAATAAACAAACAGATAAACACTCTCCAGATCTGAAAGGCTAGACCACATCTCGTGCTTCCACGCTTCTCTCTGCTTCAGCAGATGAGTGATATATTACTGTGTGCCTATGGCAAAAAGTAACACTGTTTTCATTGTTTGGTTTAAAGTAAACAAGAATTGGAAGCACTTGGCTAGCATCACAGTGGCTCAAAAGCCAATGCAGGTCATCCTGGTTAGAAGGCACGGTGGCTTCATGACTTGTGTCTGGTGCTGTGAGCCACGGTCAGAGATGGGCGAACACCACTGCGAGCTGGGCATTGTCCTGTTGGCCACCATGTGACAGCTCTGTGAAAGCTGGCACTGTGCGTGCCAAGGCCTGTGCCCAGCTATTCCAGGCTTCTGGTCATTTTCCTTTGGCTTTTAACTGGGTTAAGTTTCCTTACCTCTATGTGTGTGTTTTTTTCTCTCTCTTTTTCTGTGTTTTGTGTGTCATCCTTGGGTTATTTATTGAGCAGTGCCTGCTTACACGCAGAGTTGTTCTGAGACCTTGGTTCTGTGCATTACCAGTGCAGAAGATAAGCAGAGGCAGCCAGCTCTTGTTTGTTGCATCTTTTATCTTCAGAGCAAAAGGCTTTCCTAGACTTCTAGACTTCTAGCAAATAATCAAACAAAATTATCCACTCCTGTCTACTTAGGAGGCCTGTGTTTGGGTAAAAGACACTGATTTACAGCCCAGAAGGCATTCACAGGCAATGGAAGGGAGCTGGGGTCTGGCCAGGAACCAATCGGCCCAAAAGTCATCCAGCAAGCAAGTGGTTGTTTGCTAGCTGAGGAATGCGCCCAGCCTGTTCCATGTGTGCTACAACAACAGCCCTGTGAGCATCGAGCCGTGAGCAGCAGGGCGGTGGGGATGGAAGAGGAAGGGAGGTGCCCCGGCTGGCTTACTTGGGTCAGTGTGTTTGCTGCCAAACACACATCCACAGCCTTTGTCACCATATGGAAAAAAGGTTATAAATAGGGATAACCGTGGAGAAAGGGTGCTCCCTGCGAGCAGGTCCGTGCGTGGCGGGGTGTCTGTCCTTGGGGTGTTGTTCCCGAGCTGTGGATGGTGGGCAGCTGGGCCTGAAGCAGCACGGCGGTTAGAAAGCAGCCAGCATGCTGGCAGGGATGGAGAGGCAGTAATCAGCCGAGTCTGGTTTGTTGCGTGGATCGGAGCCAAGGGTCTCGAGGAAGTGCTGCTGATCCAGGCTCGTGGCACCCACTTTTAAAAGGAAATCCCACCTACTAAAGCAGTTTTATTTTTCACAAACTTGCTTACTGTGGTTTCTATTTCCTATAAGTTTTGAAACCTAAAATGACAGATGCATTTTTGTTTGTGGTTCTGAAGAGCTGGCCATGAACACGCGCCCATTTTCTTAAGCAGAATGTTTTCCCAGGGTGTGTGAGGGTGGGGCCAGTCACTGCTTGGCTCTGGGGATTGCAGCCCAGGTGGGTGGTGCTAGCCTGTGGCCATGTGGTGGTGGGCAGTTGAACACGGGCTGCAGTCTGCAGCCTTCACTGGTCCCCCAGCATGATTCTGTCTGCTTCTGCCTCATGGGATGGCTGGTGCCAAGCTTGGTGGGCCAGCTCTTGCTGGCTCCCCCTCCCAAGGGGGCTGGAGCCCCCACAAGCCCCCACCGTTGGGCGGGTGCCCGCTTCCCAGGGTTTAATCCTCCTGAATGGGGTAGTCACAAGGGGAAGCCCAGACTACTCGTCTTGTTGCAATGGCTCTAACCCACCAGGCAACAAGGGGGGCCCTGGCCCCAAAACAACGGGCCCCCTGACTGGACTCGGTGATAGAACGGGGGTGGGGCAAGACCAAGAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGCATTTTTGTTTGTGGTTTCTGAAGAGCTGGCCATGAACACGCGCCATTTTCTTAAGCAGAATGTTTCCAGGGTGTGTGAGGTGGGGCCAGCACTGCTGGCACTGGGATGCAGCCAGTGGTGGTGCTAGCTGGTGCCATGTGGTGGTGGCAGTGACACGGCTGCAGTCTGCAGCCTCACTGGTCCCCAGCATGGTTCTGCTGCTCTGCTCATGGTATGGCTGTGCCAGGCTGGTGGCAGCTCTGCTGCTCCCTTCCATGGGCTGAGCCCCACAGCCCCACGTGGCGGTGCCGCTCCAGGTTACTCTCTGATGGCAGCCACAGGGAGCCAGCAGCGCTGTGCATGCTCAGCACAGCACAGGGGCCTGCCCAGCACGGCCCTGCTGACTGTGTGACGGGTGGCAGCAGAGAGCTGGCACTGCTGGGCACTGCCATGCCGAGGGGGATCTCTGGGAGCGGGTCACAAGCACACTTCTGAAAGCAGGTGCCAGCCCTGAGTGGGGCTCAGTGGGGCCGAAGGAAGGCCTGCTGTGTGTGTGGCTCTTGGCACCGCCGCTCCCGGTGTTCCCTGGCACCACAAGCGCTCCTGTTGGTGAGCCCGGCGCTGTGCTGGCAGGGTGGGATGGCCGCCGGGCTGAGCTCTCCTCCCGGTGTTGCAG
Seq C2 exon
GTGTGTCGGGAGTACCAACGCGGGAACTGCAACCGGGGCGAGAACGACTGCCGGTTCGCTCACCCCGCCGACAGCGCCATGATCGACACCAACGATAACACCGTTACGGTCTGCATGGATTACATCAAAGGGAGATGCTCACGGGAAAAGTGCAAATACTTCCACCCTCCAGCACATCTGCAAGCCAAGATCAAGGCTGCCCAGTACCAGGTTAACCAGGCTGCAGCTGCCCAGGCAGCAGCGACGGCGGCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016870:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.619 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
NA
C2:
PF0064219=zf-CCCH=PD(81.5=25.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]