GgaINT0031671 @ galGal4
Intron Retention
Gene
ENSGALG00000010361 | MBNL1
Description
Muscleblind-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKW9]
Coordinates
chr9:22858386-22863761:-
Coord C1 exon
chr9:22863561-22863761
Coord A exon
chr9:22858644-22863560
Coord C2 exon
chr9:22858386-22858643
Length
4917 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTCTCCTCCCGGTGTTGCAGGTG
3' ss Score
10.24
Exon sequences
Seq C1 exon
CCCATGTTCTCCGTTGCGCCCAGCCTAGCCACCAATGCCTCGGCTGCCTTCAACCCCTACCTGGGGCCCGTGTCCCCAGGGCTGGTGCCGGCGGAGATCCTGCCCACCGCGCCCATGCTGGTGGCGGGCAACCCTGGTGTCCCGGTGCCTGCTGCCGCCGCTGCTGCTGCGCAGAAGCTGATGAGGACGGACAGGCTGGAG
Seq A exon
GTAGGAGCCCAATGGTAGCTGCTCCCGCAGTGCCAGTCACTGCGTGTGCCGGAGAGAATGTAGTTCTCTGGCAAAAAGCAAACCGCAAGCGTCACTTCGGCTGATGGTGTCCTGCCTTGGCTGAGGGCAGGGAGAGCGCGCAGCCCCGTGCCGTGCTTGCAGCTCTGCTCCTGGCCCTGCAGCCCAGAGGGAAGCGGAGCACTGAGAGTGTCCTGAGGCTGCATTAATGTGTGCGCAGCAGCTGCTAACGGGCACGGGCACAGGGCCTGCTGCAGCTGCCGGCTGGGAGCCGCTTCCAGCTCTGCCGTGTTCTTGCTCTGGGCACATGCTGCTGGCATTGCCCGGTGCCTCTGTGTGCTCCTTCGCTGCGGCCCTGGCAAGCGCTGGTCCTCGCTGGCTCTCGCTCCCCCTTGCCCTGAATCTCTCTGACCTGAAAGTCTTGGCCGTGTCCTTGGTACCATATTGGCCTTGTGCTCAGAGCCAGCACCGTGCCATGCACTCGTGGTGCTGGGTGGTGCAGGTGGGTGACATCCCAGCAGGCAGTGTGACGTTACGTGCTGCTGTGTGTGGTGCCCTCGGTGCCAGTGCAGATGTGAAGAAGCACCCAGCAGTCCCCAGGTACCCAGCGACTCGTGGCACCACAGGTGTCCGAGGGCATGGAGTGAGCAGTTCTGGAGCTGGTCCCTGCGTGCGGTGGGAGCAGTGGCAGGGATCTGTTTTAGAGTGCGGCCAGCTGTAGTGGTAGTGCCTTTCTAACTGCCTAGGCATGTGCGGCGATAGAGTGTGCGTCTGCTGATGGGGGCCATGGGCGCCTTTTGCTCGGTGGTGTCGCCTTGGCAAGCAGCAGGCTGTGAGCTGCCCGGCACCGCTGTTCCTGGACGTCACATCCACACAGGTGCCCTCCTGCAGGGTCACAGTGCTTCCCAATGGAGTTGGGGTGTCAAAGGAAAGAACTCCTTGGAGCACATTCAGGTTGCAGGAGGAGCAGCCTCCTCGGGCAGGCACGTCATCCACTGTAAGAGATTTCTCCTCAGCCAGCTCTTTATTTCAGAGGAGACTTATCAGAAAGGGATTAAAATAAAATGCTGTCAGATAAACTCCTAAATAAACCACATTGGGCTCAGAAATAAAACTTGGAGATGGGCATTTCCAAGGACCCTGCCTGCAGCCACAGGTACAGGGGAAGGGGCTGCAGCAGGTGAGCCACTGCCGGCAGGCCCAGCCCTCTGCTGGCAGCATGTTCTGTCTGTACAGTTCAGAGGTGCTGAGCTGCTAGGCCACTCTTCTCAACGCAACAGGGGGCTGCGAGAGTGTTACTCTCACAGTTAGAAAAAGGTCTGCAAAAATACCTGAAATCAGACAAATTCCCTCTCATTTCATGACATCCCGGCCTGCCAGCACCTGGCAGCTTCTCTGCTGTGATTGCATTTATCTCAGCTGGCTGTGCATCTCAGTGATGCCCTTGTCCTTGAAGGAGGGCTGTCCCTCCCCCTCTGCCCCCAGCCCCTGCCTCCCTATGAGGCCTTCGTGTGGCCCTGCCCTCACCATGCAGCTCCCTGAGCCTCCTGCTCCCCTCGAGCTGTGCAGTTCTGTGACCAGGAGCCTGCCCCAGTGCAGCCGCTCTGCAGCTCCATGCCTCTCCCACACACGTGCAGTGCCTGCTGTGGGCAGGGGCTGCTCCTCCTCCTTTTTTTTTTGCCTCGGTAAATGTAGTTTCAGTAGTCTAATATGTAGGGAATGTGGCAGTGCCGTCCAGTGTAGTGGCTGTTTAATCTGAGCTATCTAGATTTAGTGTACGAATGACAAATCAGCACATATTTTTTATGAGCAGTAAATCATTGTTATGTATTTTATTGATTAGAAAAATGCAGAGCGTATTGGGAATATTTTACCTTCCAGCAGCTGGCACGCTGCAAGCAACGGGTGGCTTCTGCTCCCTGCACTGCCACCGTGCTGCCATTTGTTCTTCCTGACTGCAGAGCTTTATATGGTTGGCTCTCTCCTTTGGAATGAGCTGTCCCATGAAAAAATAACCATGTGATGTTAGCATCTAATCTTGGAATATGATTTGTTCTGGTTAGAATTTTAAATACTTATTTTCAAGACTGATGTACTCAGTTGTTAATTCAGCTGGCACACGTGTTCTGGGCTACTGAATCACACTGTCCCACAGCAGAGAGCTCTTTGCAAACATGCCCAGGGCTCAGGAAGGCAGCAGGACTCAGTGGTGTCCTGAGCAGTTGTTGGTGCTGGTGGGGCTGGTCTAGTGCCTGTTCCTGCAGCGTGGCTCCTTCCAAAGCTTTTGGGGCGCACTGCCCATGCTGATGGTGAGCAGATGTGCAGGTGGTCATCAGCCACTCACTGAAGGCATTGGGCTCAGGGTGGAAATTTCCTGGGTTCAGAATTTCCTTCAGCTCCCCTCACATTCCTGCCCAGCCATAGAGATCCTGAACAGAAGTTGGCTCTTCTGGTAAGCAAAAAGAGAGCCCTCAAAGGAGGTGATGTGGGGGAACAAGGAGCCACTCACCTCCCTGTTTGTTCACAAGCACGTTCCCTTCTGAGCACTATCATTTTCTATTCAAAGTATTCGAGAATCAGAACAGCCACAGTCAAGCTGCTGTTTCCTGCATGCTTCACAGATGCCAGATTTTTCTGGATAAAAGCAGCTTAAAAGTTCTCAGAGACTTGCAGATACTCAGGACATGCTGGATGACAGTGTAGCCCTTCTGATAAGCTCAGTGCAGGAGGAGGCGAAAGCACAGGCTGCTGGGGGTGGGCTCGCACCGCGCCGTCCGGGTGAGATGCAGTTCCCTTGGCTGGCAGCTGGAGTCCTGCGGCTCCCTGCCAGCGTCTTAGGTTCTGTTTGTGCTTCTTAGCTTACCGAGTGGAAAATGATGATGCTAATTACAGAGCTACTAATAAACAAACAGATAAACACTCTCCAGATCTGAAAGGCTAGACCACATCTCGTGCTTCCACGCTTCTCTCTGCTTCAGCAGATGAGTGATATATTACTGTGTGCCTATGGCAAAAAGTAACACTGTTTTCATTGTTTGGTTTAAAGTAAACAAGAATTGGAAGCACTTGGCTAGCATCACAGTGGCTCAAAAGCCAATGCAGGTCATCCTGGTTAGAAGGCACGGTGGCTTCATGACTTGTGTCTGGTGCTGTGAGCCACGGTCAGAGATGGGCGAACACCACTGCGAGCTGGGCATTGTCCTGTTGGCCACCATGTGACAGCTCTGTGAAAGCTGGCACTGTGCGTGCCAAGGCCTGTGCCCAGCTATTCCAGGCTTCTGGTCATTTTCCTTTGGCTTTTAACTGGGTTAAGTTTCCTTACCTCTATGTGTGTGTTTTTTTCTCTCTCTTTTTCTGTGTTTTGTGTGTCATCCTTGGGTTATTTATTGAGCAGTGCCTGCTTACACGCAGAGTTGTTCTGAGACCTTGGTTCTGTGCATTACCAGTGCAGAAGATAAGCAGAGGCAGCCAGCTCTTGTTTGTTGCATCTTTTATCTTCAGAGCAAAAGGCTTTCCTAGACTTCTAGACTTCTAGCAAATAATCAAACAAAATTATCCACTCCTGTCTACTTAGGAGGCCTGTGTTTGGGTAAAAGACACTGATTTACAGCCCAGAAGGCATTCACAGGCAATGGAAGGGAGCTGGGGTCTGGCCAGGAACCAATCGGCCCAAAAGTCATCCAGCAAGCAAGTGGTTGTTTGCTAGCTGAGGAATGCGCCCAGCCTGTTCCATGTGTGCTACAACAACAGCCCTGTGAGCATCGAGCCGTGAGCAGCAGGGCGGTGGGGATGGAAGAGGAAGGGAGGTGCCCCGGCTGGCTTACTTGGGTCAGTGTGTTTGCTGCCAAACACACATCCACAGCCTTTGTCACCATATGGAAAAAAGGTTATAAATAGGGATAACCGTGGAGAAAGGGTGCTCCCTGCGAGCAGGTCCGTGCGTGGCGGGGTGTCTGTCCTTGGGGTGTTGTTCCCGAGCTGTGGATGGTGGGCAGCTGGGCCTGAAGCAGCACGGCGGTTAGAAAGCAGCCAGCATGCTGGCAGGGATGGAGAGGCAGTAATCAGCCGAGTCTGGTTTGTTGCGTGGATCGGAGCCAAGGGTCTCGAGGAAGTGCTGCTGATCCAGGCTCGTGGCACCCACTTTTAAAAGGAAATCCCACCTACTAAAGCAGTTTTATTTTTCACAAACTTGCTTACTGTGGTTTCTATTTCCTATAAGTTTTGAAACCTAAAATGACAGATGCATTTTTGTTTGTGGTTTCTGAAGAGCTGGCCATGAACACGCGCCATTTTCTTAAGCAGAATGTTTCCAGGGTGTGTGAGGTGGGGCCAGCACTGCTGGCACTGGGATGCAGCCAGTGGTGGTGCTAGCTGGTGCCATGTGGTGGTGGCAGTGACACGGCTGCAGTCTGCAGCCTCACTGGTCCCCAGCATGGTTCTGCTGCTCTGCTCATGGTATGGCTGTGCCAGGCTGGTGGCAGCTCTGCTGCTCCCTTCCATGGGCTGAGCCCCACAGCCCCACGTGGCGGTGCCGCTCCAGGTTACTCTCTGATGGCAGCCACAGGGAGCCAGCAGCGCTGTGCATGCTCAGCACAGCACAGGGGCCTGCCCAGCACGGCCCTGCTGACTGTGTGACGGGTGGCAGCAGAGAGCTGGCACTGCTGGGCACTGCCATGCCGAGGGGGATCTCTGGGAGCGGGTCACAAGCACACTTCTGAAAGCAGGTGCCAGCCCTGAGTGGGGCTCAGTGGGGCCGAAGGAAGGCCTGCTGTGTGTGTGGCTCTTGGCACCGCCGCTCCCGGTGTTCCCTGGCACCACAAGCGCTCCTGTTGGTGAGCCCGGCGCTGTGCTGGCAGGGTGGGATGGCCGCCGGGCTGAGCTCTCCTCCCGGTGTTGCAG
Seq C2 exon
GTGTGTCGGGAGTACCAACGCGGGAACTGCAACCGGGGCGAGAACGACTGCCGGTTCGCTCACCCCGCCGACAGCGCCATGATCGACACCAACGATAACACCGTTACGGTCTGCATGGATTACATCAAAGGGAGATGCTCACGGGAAAAGTGCAAATACTTCCACCCTCCAGCACATCTGCAAGCCAAGATCAAGGCTGCCCAGTACCAGGTTAACCAGGCTGCAGCTGCCCAGGCAGCAGCGACGGCGGCTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016871:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.410 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
NA
C2:
PF0064219=zf-CCCH=PD(81.5=25.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]