GgaINT0034987 @ galGal4
Intron Retention
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12667937-12669462:+
Coord C1 exon
chr8:12667937-12668114
Coord A exon
chr8:12668115-12669346
Coord C2 exon
chr8:12669347-12669462
Length
1232 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TTCACCTTGTGATGTGGCAGGTG
3' ss Score
6.82
Exon sequences
Seq C1 exon
GCTGACCACCTCAGTGGATGCTGTTGTTGCCATCTGTGTGATTTTTGCCATGTCCTTTATTCCAGCTAGTTTTGTTTTATACCTGATTCAAGAACGTGTGACAAAAGCCAAGCATCTCCAGTTTGTTAGTGGTGTTAGCCCTGCTATGTACTGGCTAACTAACTTCACGTGGGACATA
Seq A exon
GTGAGTAACTGCTAGTCTCATTTTATAGTCTGCAGCATTAACTACGAAATGATCAGTAAATTAATCAGAATTACGTAAGTGCAACTTTTCAAACCAGGGGAGATCGCCTTTGCCAAGAATTTAGTCATAGACCCTACCCTCTCTAAGAAACTTAAAGTGTTTCAAGATATTCTGGATATCTAAGCAGGATATTCATCAGTTACTGGAACAGTAGCTGGAAGCCAGAAAAAATACTCTAGGGTGTCTAAAATAATGTGGATGTATTTGTTTAGGCCATTGGATCATATTCATTGTGTTGCTTCAAAAGGATTTAGAGCACAGGACCAGGCATGCTTAGGCAAGGCTCAGCTATCCTTTTTATTCACCGGGCCTCTTGGAGGAATAAATTCCTTGCCTGCTAGAAGCATAGCAAAGAGCTTGTGTCATGGTTTTTCAGTAAAGATGGAGCCCAAGGGTTTATCCAATAAGAAAAGCATGAACATAAGAGAGGAGAGAAGAAGAGAGGAGGAAAAAAGAGAAAATTTTGACATGCCCCAAACTTTTTGGGCTTTAGAAAGTGTTTTTTAATGAGGAGATAAAGCAAAACATGATATATTAGATGAGGGAAAAGAAGCAGATCTCTGAGTTTCTTTATCCTGCTGGTCACAGCAACATCCCATCAGCCAGGAATTCTGCTTGGTAATGGCCCTTCACATCATAGTACAAAGTTATTAACTGGAGTTAGCAGTTCTGTGAAATGCTGTTTTTCAGTCTTCATGGGGAGCTCTATGTATTGCAGTAGTCCTATACTACTAATACTGAACAGAGAAATTGAGCAGAGCATTAGCCAAGCATTGTTCAGTTTAGCTTCATCCCAGGAATGTGGCTCAAGTTACTAGCTTTTTCATTCCTATACAGCTTTTACATCACCAGAAATCATATCTCCTTGCATACTCACTGCCTTTTTCTCCAGGCAGTCTGCCAGCAGGACCATGAAACAATCAATTCCAAATTTATAATCTAAAAAACAGCATGTTTTATTTTTGATTTACAATCTGATAGAAGATGTCTCAGAAAAATGTAAAGTGCTGCCAGGGGCCTGTTGAGCCACAGGCCTGAGCAACTAGTCCAGCTTGCTAATTTCAGTTTTCCTCAATACAAAATCCTTTGAGAATAATTTATAGGATCTGGATACATTTGTAAACCTCCTCAGATCTTATCTACTGATCTTCATTCACCTTGTGATGTGGCAG
Seq C2 exon
GTGAACTATGCAGTGAGTGCTGGATTGGTTGTGGTTATATTCATTGGATTCAAGAAGAAAGCATACACTTCTCGGACTAACCTCCCTGTGTTTGTTGCCTTGCTGCTTCTGTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCAGTGGATGCTGTTGT
R:
CCATACAGAAGCAGCAAGGCA
Band lengths:
288-1520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]