RnoINT0010254 @ rn6
Intron Retention
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225753417-225759994:+
Coord C1 exon
chr2:225753417-225753594
Coord A exon
chr2:225753595-225759878
Coord C2 exon
chr2:225759879-225759994
Length
6284 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
TACTGTCTCCTCTCTTCAAGATG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GCTGACTACTTCCATCGATGCCGTGGTTGCCATATGTGTGATTTTCGCCATGTCCTTCGTTCCAGCCAGCTTTGTCCTCTACCTGATCCAGGAGAGAGTGACGAAAGCCAAACATTTGCAGTTTATCAGTGGTGTGAGCCCCACCACCTACTGGATGACCAACTTCCTCTGGGACATT
Seq A exon
GTGAGTGCCAGGCCTTCCCCAATTTCCAAAGGCCCAGAGCAGGACTGAGCAGGGAGGGATTTCGAGTTGCCTGGGCTGCTGGGGCAATGGTCTTGTGGCTGCTATCTCTTGACATCTTAAAAAGCCAACTGGGAGGGTTGGGGATTTAGCTCAGTGGTAGAACACTTGCCTAGCAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGGAAAAAAGAAAAAAGAAAAAAATGTAAAAAGTCAACTGGGAACCAACCCTTGAGAAGACCACTGAACACAGTAATAGCCACTGAACAGATCTTCCTGCCAGTAGCATGGGTCTGAGCAGGTAATACTGAATATCCAACATTCCCTTCCTAGGTCCTGTCTCAACCTCTACCCCCATCCCAAAAGGGAAGGTATCACAAGGACTCCCTTGTGATAGGGTCACCAGGTAAATATAGGCTAACCACCAGCTCTGAATCTCAGGATAAACAATGAGCAACTCATTGTGTAAATATTGAGTATACCCCCACTTCAACAATTACATTAGTAATTGATTTGTATAGATATGGTAGCATATCTACACTAAAAGGTACTGGTTGTTTATCAGAAATTCAAATTTAATTGGCTATTCCATATTTTAATTTGCTGAATCTGGGAACACTACTCAGAAACCTTATTTTACTTCTTCAGAGTAACCAGGCTTTTCAGTTACAGTAACAAAATGGCATAGTCTTTCTGGGGTGAAATGGCTCAGCAGGTAAAGGTGCTTTGCAACGCAAACCTTATGACCTGAGTTCAATCCATGGAACCCGTGTAAAGGCAGAGAAGTGCTCCAAAAAAGTGTCCCGTGCCTCTGCACACATATGTGTTTGTGGTGTGTGTTAGCCATCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAACAAGTTGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCACACAGGGCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTCACTGGCTTGTCCCCTGGCTTGCTCAGCTTGCTCTCTTATAGAACCCAGGACCACCAGCCCAGGGACAGCACCACCCACAATGGGCTGGTTCCTCCCACCTAGATCACTGGTTGAGAAAATGTCTTACAGCTGGATCTCATGGAGGCATATCCTCAAGGGAGGCTCCTTTCTCTGTGATAACTTCAGCTTGTGTCAAGTTGACACACAAAACTAGCCAGTACACCATCCATCCATAACATGCACATATATTCACACAACAATTGGGTTTTTTTTAATTGGGTTTTTTTTATATTTTTTTATTTTATGTATAAGAGAACACTGTAGCTGACTTAGACATACCAGAAGAGGGCATCGGATCTCATTATAGATTGGTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTCAACTGCTGAGCCATCTCTCTAGCCCAACAATTGTTTTAAGTGACCACATCTTCACTGTTATCACATCAGCAACCGTGTTAGGGAAAATTAAGAAAAGGAAATAATCAGATCAAGAGCAGGCAACAATCAAGTTTGGTGGGGCCAGAGAGAGATTAAAATGCTGTATGCGTTATTACAGACTGCAGGATCAAACGGAACTGTTAAGAGTGTAGTTATCATTGTGACACCAATCCATCTTTTCTTGTTGTCCTGAATAACAAGATCTTTGAGTCTTTTTGTTTTGTCTAATTTTGAAACAAGGATCTCACTTCTGCAACCCTAGCTAGCTTGGAACTCAATATGTAGACCAGGTTGCAAAGTCTCAGAGATCCACCTGCCTCTGCCACTCAAGTTCTGGGGTGAAAGGCGTGTGTTACCCTATCAGGAATCTTGGTTTTATCTCAACATTACAAAAACTACACATTGGCTCATGGAGACCAGCACCAGTGGTCCTCTCCCTGTGGGTTTTGCTAATGATGTTGACTCTAAAGGCCCTTGATGGCATGATTCCTTTGACCTCACTTACCTTACTAGGTAGCCATCACTTAAAAATTCAAAACTGGAAAACTTTACTAGCAGCTGGATTGCTTCTCTTTTCTTCTGCCTGCATGAAAGGACACCCCCTGGTGCATGGGGATCTCAAGAGCTATAAGCTTCTCTTTGGACTGTGATTTTTTTTAATACTTATTTTATTTATTATATATAAGTATACTGTAGATGTCTTCAGACACGCAAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGTACCTCTGGAAGATCAGTCAGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCTGGACTGTGATTTGAACGGGAAAGAAGTTGGGCTCATCTACCTTAAAAAGCTAACTGTTAAAAGTGTTGACTATTTTACTATTTTTAAATGTATTTTATTTTTATTTTATGTGTGTTTAGGTCTTTGAGGGTTTGCCTATGTGTATGCGTGTACCACATGCATGCCTGGTGCATTCTTGAAGCCCAAAAGAGAGCATCAGATCCCCTGAAGCTGGAGTTACAGTCAGTCGTTAACTGCTATATAGGCACTGTGGATCCAACATGGATCTTTTGCAAGAACAGCAAGTGCTCTCTACTATTGAGCTATTTTTTCAGCCCTGTTTTCACCATTTTAAAGGTGAGGTATATAACTTACACTTGGGACTAGCCTATGTATGTATCTATGGACACACAGAGAGATCTGGGAGCCTGTAGGAAGGCATGGCTATAAGCAACGGGTGGACATCTTAGGTAGAAGTGGCACTGGCAGAGTAGTCAGCAGGCTATTTTTTCAAGGATCATAAGGTGTTGGCTACAGTATCGGCAGGCTTTCTGCCACCCTCAAGATTTATAGCTGGCTGTGACAGGGTCATTGTAACAGCCAAGCTCTGTGGTCTAGAGTGAAGGTGCTCATTACTCATTAGTCAGCGGCAAGGAGAAGACACTGCACTCTGGGAGTCATTGTTGAACTACATTCAGCACACCTGTGTCCCTGTAAATTCCTGTCTTGTATGTGTCATCTGTTGAAACGGTGTAATCCCACAGATGTGGCAAGTACAGTTTGAAGCCTGATGAGTTAGCTGAAAGTATCTTCCTTCCCTCTTCCTTCCTTCCTTCTTTCCTTTCTTCCTCCCTTCTTTCCTTTTTTAAGAAGGAATTTACTGACTCTTTGTTCTAATGCTTCTTGGCATCTGCTGTCAGTCCTGTCCAGATCTCTCCATCCCTGAGGTATCACCTTGTCCTCAGTCCTTTTCCATGATTTTCAGCCCCTCTAAGGGCTTGGAAGACACATTCTTAGAGCCTCTGCTGAAGTGGCTGGGCCTGACACCATGTCTATGACATCCTTTGGAGATCTTGGTCAAGGAGCCAGCTTCAGTATTATCTCAGGTGTATGGGTGCTGCTCTGGGGAAGCAGCTGCTGTGGCGACCTCACCATAGAGGGCGAGCCCTTATGTTTGGCCAGCCTGACTGTGTCCCCCCAAGTCGGGACTCTCTGCTTCCCAGACCTTTTGAGGAAGGCTGCCAATGCCTGCTGCTTGACTTTTCACAATTCCAGGCATCCTGCAGTCTCTCGGCTGCTAGCTAGGAGGAAAGGGTTGAAAGGTGTTTTGTATGTGCATGTGTGTCTGTCTGTCTGTGTCGTCATTGTCTCTCTTTCACATACACATAGACACACCCCCCTCTGGTGTGTACTTTTACAAACAAGAACATGCCTCCATACCAACGCCTTGAACCAGGTCATGCTGTCTCTTTGTCTCCTTCAACCCAAGGCAGTTCCTGCTCCTCCCCTTGACATACATGACCTTGACCCACTGGAAGATTACAGGGCAGTTATTTGACAGGGTGTCCTCCAACTTGGGGTTACCTGAGGTTCCTCATGAGGCTTTGGTCCTTGGCAGCAGTGTCCAGTGCAGAAGCTGGGCTCTCTTGCACCCCTCAGTTTGTATCTGATGTCCACTTGTCCTAGTTCTGAAGGCATTCACTTTGCCACTTACAAAGGTGTTTGCCCAGTTTCTCCACCACAAGAATTAATCTTTACTGCTTTATTATTAATGAGAACTTTAAGGGATACTTTGAAGATGTGCACTTAACTGATTTGTTAGCAAACCCTTTGTTCATATATGCAATCATAGCTCTTGTTAATTAGTGGATTCTAATATGATACGACTACTATTTAGTTTAATACAGAGACTCTCAACTGTGTGGCCAGTCGGCACTCCTTTAATAGGGCCCTTTAGGCCCTATTGACTCGTGTCCCTTTTCCTGGAGTACCTCACTGCCTCTGGTTGTGCAAGAGACCCCAGGCTCACACTGCACGTCCCCTGGAGCCAGGCATTTTCCCAAGGGACCCTGGTTCACTTGAGTGGGAAGTAGATTTCATAAACTACAGTCTGGACACCAGCCTTGTTCATTTCCACCAAGATAGCACTGATTACAGGCCTTCTAAGTCGATAGAACCAGAGAAGACATTTGCATGCAGTTTTACACCAGTCTTCTCTCTCTAGTCACTAACCGCGATGCTCACCTCTAACTCAAGTCTACTGCCAAAGAGTTCATGCTAGCTGTCTGACTTTTCATGCTCACAATTCTCTTCTCCAAGTAAGAAACTGGCTTTGCCACCCCCAATTATTTACCCAACTGAGTGATATATACACTTGTAGTAAGGGTTCCATCTCTGCCCTGGTCCCCTTTCATAGGAATACTCCTCTTTCTTTCCGGCTTCAGCAGTGTTCCATACTGCCCAACTTCCTATACAGACACTTCTTCACCCCGTGCTGTTATAGGTCAGAGTCTGAAATGGGTGCTCTTGGGTCCTTGGCCCCTTAAGAACAAAATAGAAGCCTACACAGGGGATGGAGAGAGGGCTCCGTGGTTAAGAGTGCTTGCTGCTCTTGCAGAGGTTTTAGGCCCAGTTCTCTGTACCCACACAGTGGCTAACAACCATCTGTAACTCCACTTCCAGAGGATCTGATGCCCTGTTCATGTTTGTTAGCAAACTGCATGCACATAGTGAGTGCAAAGGCATGCATTCAGGCAACAACACTCATGCATGTAAGATAAAAATGAGCAAATCTTAAGGATGAATTGACCACAAAGTAGCAAAGAAACTTTATTTAAACTATGCAATAGAACAGATTAGAAATACACTGTCAAGATTGGCAGCAGGCCAAATGAGTGAGGTCATCAAGGGCCCCAGTTATTTCCTGGGGTTCAAAAGGAGGAAGAGCTTGTTTGCTAACAGGTGGAGTATAGAAGTTTCTGTTGTAACCAACTAGGATTGTATCAATCTTCGCTTAATGTGCATGCCCCTCCTGGTTTTAATCCTATGCATGTCCGGCTGTACATAGGCATAAGATGGTGAATGGGGAATTTCCCCTGAAAGTTCATTTGAGGATTCATTTTTGCTTTATCCCTGTACCCTAGCCAGTCTAGGGTGCTCAATATAGGTCCATAACCTGTAATTCCAAGGCAGTATTCCAGGAGTACTGGAATTCGAGTAGGGCACATCAAAGGGTTGCTAAGAGCAGTAACATTTCCATTGCCTACCACAGATGTGCATGCAACCTGATGAAGCCAGAGTCTTAAGTTGCTAACAAGTATTATTTGGAAATGGTTGTGTGTTTAGCCCAAGCCAAGTGGAGTCACAGGCTGCTAAGCTATTCCTTATGCTTCCCTGTCTCAACAGGGCTCTGGCACTCACTCCAGGTACCCTCTGTGCAGTGCCCTCCTTACCCTTACCAGGCTTTTACCCTAGTGGAGACCTAATCTTACCATGCCACCCAGCTCTCCAAGCCTGACCTAATGTCTTCAGAACTGCATTGTTTAGAAGAGTTACCCCTATCCATGTGAGCTTCTCAAAGACAAAAAAAGCTATATTTTAAGTTTTTCTAAATTCTGGAGACATGTTTAGAAAGAATAACCATCAGGACTTTATAACCAATTGGAGTAAGAGAGACCAAGAAAGTAAGAGAGCAGAGAGACGTTCATATACATCCTTTCTGCGGACACAGACTGGAGGTCTTTAAACGGGTAGAAAAGAGCTCACAGGAGAATTATGAACAGCTTGACCTATGCTTTACCTCTGTGTCAGTTGACCAAATCTATTTAGACAAATGGACTCAATCCACGTCCATAAGAGTTGGAGAAGCCTGGTCCCCAGGTCACAGAGGTTCAGAGTCATACTGTCTCCTCTCTTCAAG
Seq C2 exon
ATGAATTATGCTGTGAGTGCGGGACTAGTGGTGGGTATCTTCATTGGATTTCAAAAGAAAGCCTACACATCCACAGACAACCTTCCTGCGCTTGTCACTCTGCTCATGCTGTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892:ENSRNOT00000017878:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.7=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]