GgaINT0034990 @ galGal3
Intron Retention
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14422800-14423776:+
Coord C1 exon
chr8:14422800-14422923
Coord A exon
chr8:14422924-14423646
Coord C2 exon
chr8:14423647-14423776
Length
723 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GGTGCTCCACCTCTCCAAAGGTG
3' ss Score
7.18
Exon sequences
Seq C1 exon
ACTTTGCTGAAATTTAATAAAACTTTGAAAAATGTGCTAATTGTCTTCCCACACTTTTGCCTGGGTCGTGGCCTCATTGACTTGGCCATAAACCAAGCTGTGAGTGAAGTATATGCCAGGTTTG
Seq A exon
GTAAGTAAGATATAATTACCAACAAAGTGTATCAGTGGTACATGGCCTGACCTTGAGTGAGATGGTTGGAAGTGTTGTTTTGGAACATTAGTGTTTGTTTCTAAAATTCTTCTCTTTCACATGATCAGGTGAATGAGTATGAAAGTTTAGCCTCCCTGAAGGAATCACAGCTGATAATGTTGCCAGAACTTCAGGGCCTGACTGGTGGCCTGTTTTGAAAGTTAAACTATTTGTTCGCTGCCAGACTCTGGTATATTTTCATAAATTGTCCTGAAGTCCCTAGATTATCACATCTAGGATATAAAATTTCATTTCATTTGAATACTACGTGGCCCTCATTAATATTTAAAGTAGATGTTCTTCAAATGCATTCTTTAGGGATGCGGCTGTTTCCTCATACCAATTTTTTTATTAAGAGCATAGTGATACAGCAATTTTTTCCCCACCCAGAAAATATTTTTCATGTAATCCATGCAGATTTCATGTTATGTAACACATATGTATTCATATATATTCATAGAGCTTATGTTCATTTTTACTCCCATGAAGCAGTTGTTTCTTAAGAATCTGTATTTATTGATGCAATGAAAAATGGCAGACATTGACTGATAGTGATTAAAATTAGATTTTCTTCCTAAACTATTATGTTCACACCTTTTGTTCCAATGAGCAGTGTTTTTTCAGCAGTATTTCATTGCTTTCTGGTGCTCCACCTCTCCAAAG
Seq C2 exon
GTGAGGAGCATGTTTCTAATCCTTTTCAGTGGGACTTCATTGGGAAGAACCTGGTTGCCATGGCTGTTCAAGGAGTAGCATTCTTCACTCTGAATCTCCTTATGCAGCACCAATTATTCCCCTCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.5=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAAAATGTGCTAATTGTCTTCCC
R:
CATCTTGAGGGGAATAATTGGTGC
Band lengths:
230-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]