RnoINT0010257 @ rn6
Intron Retention
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225762976-225763581:+
Coord C1 exon
chr2:225762976-225763099
Coord A exon
chr2:225763100-225763451
Coord C2 exon
chr2:225763452-225763581
Length
352 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
3' ss Seq
CCCATCGCTTCTCTTCTCAGGTG
3' ss Score
11.22
Exon sequences
Seq C1 exon
ATGCTGCTCAGGTTCAGTGCCACGCTGAGGGAGTTGCTCATTGTCTTCCCACACTTCTGCCTGGGCAGGGGCCTCATCGACCTGGCACTCAGCCAAGCTGTGACAGACATCTACGCCCAGTTTG
Seq A exon
GTGGGTAGCATTCTAGGTCTGTGGGCACAACCATGAATATATTCGTGCTGGGAAAGTTACAGCAAGGGTTCTGATGTCAGATCTACAGCCTAGAATGGGAGGGCACCTACATGCTAGACCAGCCACCTAGAAGGGCTTAGGGTGGCCCTGTTTCTGTGGCCAAGAGCTCCAGTTGGGGCCAAGCACAGTGTTTTACCTTCCTATATGCTGGCCCGGGGAGCCACGAAGAACTTGATTTGGGGTCCTTTAGCCTCTCACATAAGGCCTGGGCATGTGAGTCAGGTCTTCATGAGTGAGCCTGGTAGCCTGATGCACTCTATTCTTACCAATGTCCCATCGCTTCTCTTCTCAG
Seq C2 exon
GTGAGGAGTACTCTGCAAACCCATTCCAGTGGGACCTGATTGGGAAGAACCTGGTTGCTATGGCAATAGAAGGGGTGGTGTACTTCCTTCTGACCCTGCTCATCCAACACCACTTTTTCCTCACCCGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892:ENSRNOT00000017878:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.7=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(11.0=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCTCAGGTTCAGTGC
R:
CACCGGGTGAGGAAAAAGTGG
Band lengths:
254-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]