GgaINT0034998 @ galGal4
Intron Retention
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12680195-12680908:+
Coord C1 exon
chr8:12680195-12680287
Coord A exon
chr8:12680288-12680658
Coord C2 exon
chr8:12680659-12680908
Length
371 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
ATCCAATTTCCAAATCACAGGTT
3' ss Score
3.93
Exon sequences
Seq C1 exon
TATGGAAGAATGTGAAGCTCTCTGTACTCGTCTAGCCATCATGGTAAAAGGTACATTCAAATGCCTGGGCACAATTCAGCAGCTAAAATACAA
Seq A exon
GTAAGTTGAATATATTATATATATTATATATATATATATGTATATAACACTTATATATATAAGTGTTTTTAATGGGTAAACTTAATACATGTGGCATAAACCATTCTTAATACAGCAAACCAATCAGAAAAGCTGTTGTTTGAACAGACCCATTTCTGGGTGCAATTCTGTGGTATTCTAGACAATTTTAGCAGACCTCATTTCAACTTCATTATGCTGCAGGCCACTTCTGCAAGGCAAATATAGAGCTTCTAACCAAGCTAGATCTTAGGCATTATCTTCCAGTGATTGGTAACATTTTCATACCTGCTGAAAAAAGTTTTTTTCACTGAATTATGAAATGATCTCTTCATCCAATTTCCAAATCACAG
Seq C2 exon
GTTTGGAGATGGCTACATTGTCACACTGAAAATCAAGGCTCCTAAGACTGGGATGCCTCCAGATCCAAGTCGTGCTGAACAATTCATACGCATAAACTTTCCAGGGAGCTTACAGAGAGAGAAACACTACAACATGCTGCAGTATCAAATTTGCTCCTCTTCTCTGGCTAAGATTTTTCGGTTAATAATCTCCAATAAGGAAAACTTGTATATTGAAGAATATTCTGTCTCTCAAACAACATTAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGAATGTGAAGCTCTCTGT
R:
CTGATCTAATGTTGTTTGAGAGACA
Band lengths:
342-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]