RnoINT0010266 @ rn6
Intron Retention
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225776602-225779637:+
Coord C1 exon
chr2:225776602-225776694
Coord A exon
chr2:225776695-225779387
Coord C2 exon
chr2:225779388-225779637
Length
2693 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
ACACGCTGCTCACTTGCTAGGTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
CATGGAAGAGTGTGAAGCACTGTGCACGAGGCTGGCCATCATGGTGAAGGGCACCTTTCAGTGCATGGGCACCATTCAACACCTCAAGTACAA
Seq A exon
GTAAGCAGATGGAGGGGCTACCTTTTACTACACTCTACGGGTTTATCCAGGCCTTGAGTTCATCATGAGACATTTGGGACACGTGCCTCTCATTCCACAGACATTGGCTGGTGATAGCTGGTCCAGACTCTCTAGAGGCAGATGGAGAAAGCTGATGAGATGTTCTGTACTGGGCTAATTGCTTGTGGTTGGAAGTTCACAGGAGTCTCTGGATAGGAGAGTTCTGACTGGGACATTTACAGAGCCTGGCTGGCATGGGGGAGGGCCACTGTCATTGACCCAGTATCAGCCTGCATTTCTCTACAGATCCAGGACCCATGGCACATTTCATGAGGGGTCTACAACCAACATAGGAATGAACAAAAGATCAAACAGCTTGAGAACCAGTTTTTCTTTCTAGAATATTATATCTGGTTCAGTTTTTAAAAAATGACCACATGTCATGTGACAAACTAATAATACAGTAATCTTGAGCAATATTACCTTGTAACCATAAACTTATAAATGGTTAAAGGTAATTCCTTATTACTTATAACTTGTAAACTAAAGCTAAGAATTCATTAAAATGAGATTATTATAACAGCATCGCTTCTCACATCCTAATATATCGGGGGAAGAGTAGATTTATACTTGTCACTCTTCCCCAGGCATATTAGAATATATTTAATATGCTTATGATGAACCCAGGATATAAGCTGTCAAGCTAGCTGGTGCTGAGATCCACATCTTGGGGAGTTCATGAACCATGTTTCATGATAACCGCCATTCTTCACAGGGGTGGAAAGATCTAATATATATGGTGGGTTTGGCAAAGGTATTTATGTATTTATGTATTTATGTATTTATGTATTTATGTATTTATTTATGTATTTATGTATTTATTTATTTATTTATTATAGATGAGTACACTGTAACTGTCTTTAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCACGTGGTTGTTGGAAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGGCAAAGGGTTTTGACCCTGATTTATTTCTTCAGTAACCACCATGTGGAGACTACACAGATAGCTATGAAAGCATCAGCCTATGAGAAAACCAGGCCCGTGTCAGCAACTCCTCATGCCTAACTGCTAGAGTACATCCCTCCACTTTTCCTCTCATTCCTCAATATCCTCATGATAGCCCAGATAAGGGGGAGGGTGCTCCTGTGTGGAGCGATGGCTGATTTCCTGAGACTGGAAGGCTACTAGTTTCTTACTGTAGAGACAGCCCTAGTTCACAGAGGAAGTTCTTCAGTAAACTTTAACATAGGTTTTCACAGTCACTAGCCAATGATTCACACCCTTTCTGATGGTCCATTCTTAATCCACATAGGGTGGCCAGCAAACCTAGTGAGGAGAAGGAAGGAGGATCATTGTTGGTCTGCTTTATATCACTGTAACAAAATGCCAGAGAAAAACTTAACTTTAAGGAGAGGTTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACAGATTAATCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCATGTGGTGACTTAGAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGATACAGTGTACTTATAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAAGGCGGGGCTGGAGAGATGGGCATAGAGGTTAAGAGCACTGACTGCTCTTACAGAGGTCTTGAGTTCAGTTCCTGGCAGCCACATGGTGACTTGTGACCATCTATAATGAGATCTGGTGCCCTCTTCTGGCCTGCAGGCATATATACAGGCAGGCCACTGTTTACATAATAAATAAATAAATAAATAAACAAACAAACAAATAAATAAAAGAGAAAAAGAAGGAAAGACTCCTGGTTCTATTGATTTGGGCCTGGGGCAGAACATCATGATGATGAACATGATGGTAATGCGTGATAGAGAAGCCTGCTTACCTTAGTAGATTCTAGGAGAGCGGGAGAAACACACACACTCACATGCATGTGCGCACGCGCGCACACACACACATCTTTTAAAAACATGTCCCCATGATCTGCTTGCTTCAGCTGGGTCCCACCTCTAGTGGAATCATCCACTGATAACTCGAGAGTTCCTCATGATCGTATGACCCCTTAAGGTCCTACCTCTGATCAGTGCTGCAGGACGGACTTTAATACACGAGTCTTCAGGCAGTGTATCATATCCAGACCACAACAAAGCCCATATCTTTCATGAACTTTCCTCAGGAAGTAGTGCCTTCCCAAGCCTTCTTTCCTGACAAATCATGTAAAAGCCACTCAGTCTCCCCCACATAGAGCTCAGTGCCCTAGCACTTTATCGCTGGGCCTAGGACCTCTACAGGGGGCTACAGTCATCTTGGACTTCAGCAAGCACGTTCATCCAGTTTCACCACACAGACATGTAGACCTCCAGAAACTGATGGCAAACATTTTGGTTCTCGCTCCTAGTTTTAAACATGCATAGAAGGCCAATTCTTTGGGCTTCTAATCCCCATTATGCCTGATGAGTGTACTCTTTGTCTAGGGATTGCCTTAGCTCTTACAGTACTGTACACGCTGCTCACTTGCTAG
Seq C2 exon
GTTTGGAGACGGCTACATTGTCACAATGAAAATCAAATCCCCAAAGGACGACTTGCTTCCTGATTTGAATCCTGTGGAGCAGTTCTTCCAGGGCAACTTTCCTGGCAGCGTGCAGAGGGAGAGACACCACAGCATGCTCCAGTTCCAGGTCCCCTCGTCCTCCCTGGCCAGGATCTTCCAGCTGCTCATTTCCCACAAGGACAGCCTGCTCATCGAGGAGTACTCAGTTACCCAGACCACACTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892:ENSRNOT00000017878:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]