GgaINT0037460 @ galGal3
Intron Retention
Gene
ENSGALG00000003429 | F1NQJ4_CHICK
Description
NA
Coordinates
chr8:5417383-5423771:-
Coord C1 exon
chr8:5423682-5423771
Coord A exon
chr8:5417593-5423681
Coord C2 exon
chr8:5417383-5417592
Length
6089 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
GCCTGTCTCTCTCCCCTCAGGCT
3' ss Score
12.25
Exon sequences
Seq C1 exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCAAGTCAGATGTATAGTCCGCAGGGCATCAGT
Seq A exon
GTAAGAAAAAAAAAATAGGCTTGGGTTCTTGTTTTATTTTTTTCCCTCCCTTTCATTTTTGTTCTCTCACTACCAATTATTTCAAAGCCATAGGGCTCAGAATGCCACTTAGTAGGACTTGTCTTTGCTTTTACGGTCACCTAGTTTATTGCTTCTGTATCGGTCACGCCAACGGCAGAGCTTTGCCCACGAAAAAAAGTGGCGACTGGGCAGGCTCTGTGCAGGCAGCTGGCGTCTAGGACTGTCAGAGCCGATCAGCGTTCGCGTGGCACCTGCGGCCACATGCGTTCGGCTGAGAGGAACTGCTAAACAGGTGACACCTCGCGTAACCGCGGTGGGGAATGTCACCACGAGCGCCCTGGCCCAGAGATGGCTCCACGCCGAAGAGGCTGATGGTGGCATCCTGCAGTGGCTGCCTAAAAATAACCCATCCCTGGCCAGCATCTGAAGCCGGGCTGAGCGGGCGGGAGGGGGCTGAAAGCACGGCGGTGATGGGGTTGACGGCGGTAATGGTCATAAATGGAATGAGAAGGGGAAAAAAACAAGCGCAACCCAAGAAAACCTCGCCCAACCGAACTGGGGGAGGATGCGAGGGGGAGGGAGGGCTTTGGAGCATCTTCTCCTTGTTCTTGGGTGCGCTGGCGGGTTCTGACTAGCATGAAAATTCGTAGCGACAAGCTGTGTCGTACAGGGTGAAATCGATCAGACACACACAAGGAGAACCGAGTGTAGATTCGGGACAGCAATCCAACTTCATTTCTCAGATCAATCGTCCACCATCTCAGCGGCGGTGACAGCAAGCTGGGAGAAGAGGGCAGCCTGGAAAAGGAGGCTGTGCTCGCGGAGTGGGTGGTGGTGGTGGTGGTGGTGGCCGGGCTGGCGAGGGGAGGAGGATGGCTGTGGCCCATGGTCTGTGTGCGCCACAACCCCATTGGGTGGCAAGGAGGATGAAGGTTGAGGCGGGGTAGTCTTGGGCTGCTCAGGGAAGTGGTGGGTGCCATGTTGTGTTTTGCTGCCTGTGTAGCTCACGGGAAGACTGAGAGAGTATTGTCTTTGGGGAGAGGGGGTCAGGCCCAACCTTGGCTTTGGGCTTGGGCCAACAGCAGCATGGGCTGCTCCGGCAAAATGCAGCCTGTGGCGAGGCGGCCAAGGGATGCCCAGGGAGCTCCTGCTCTGCCAGCCGGCGTCTGTGGCTTCCTGTCAGCTTGAAACAAAGGCGCTGAGATGGAGACGTGATACATGAGGAGGCATTAAAAGAGCTTCCTCGCAGCCTCCAGCCCTTCCCTGCCTCTGCCTTTCATTCAGGGACGGGAGAACATGGCCTCAGCTGCCAACCACAGGGCACCTCGCCCTGCCACATCTCCCTTCGAGTCCCTTCACCCTCCAAGGAGACCACTCTCCAAGGAGGCTTTGCCATTCGGCACCTTGCATCTGACCAACTTGGGGCCCTTGGTGTCTGAACGACCACTGCTGACATGGGGAGACCCCGGGGGTGGAGGAAGAAGGGGCTGCAGGATGGGGGCTGCGCTCCCTGCTCTGCCGGGTGCTGGGGCTTAGCGGGCAGCTTGACGTCACGAGGCAGAGCCAGGGAGGATTTGTGAAGTAATGTAATTGAACATGTGCAGATAATTATGTCTCATTACATAAGCCCGTTGCAAAAACGGTGCTTGGAAATGCCACATGAAAGAGCCTATCGTTCCGCATTAATTTCTCTGTGCGCTGAATTTATTCCCTTTCTGGCTTTTTAATACTTGAAGAGTAAATGAATCGGAGGCTGATCATGATAAGAGATGATACTTTTGTATAAATTAAAATACCCCCAAGGAAAGAGGCTGAGCTGATTATGGTTGCAGTTGGCTTGGAAAATAACAGCGGGCTGGGTTAAGCCAAAATTTCGGGGGGGGGAGGGTTGCTGATGGGGATTTCAAGGCAGGGAGGGGGACAAGGGGAGAGGGGAGAAGAAAGAAGGAGTGGAAACTTGAAAGCCAGTAGGACGTCAGCGGATGGACTGGTATTTCTGGCAGCCAATGGTGGTCGTAATGGGAGCAGCAGTGGGAGTTGGTGAGCTGACGGCCACAGCTTCCCAAACGGTGACCCAAGATGAGTGGCATGTGGTGTTGGCTGGTTTCTAGGAGAGCAGGAACCCAAAGTTGCTTAAAAGGGTCAGGCTCGTGAAGGATGAGGATCAGAGACAGGCAGGGAGGCAAGTGGGTAAGCAACCCACCCAGTTTGGGGGAGACTCCTTATCTAGCTAGCGTGTTTCCCCATATAGCATCTGGAACCAGCCTAGAAGAGAATAGAAGGTTTAGGAAGCATCTTCTGGGTTGCCTTTCTTTCCCCAGACCCTTTGCTTGCGATATCATGTCTTCTCATCCATCTGGATCCCAAAGCATTCGGCAGCCCCCAGCTGACTGATCTGCCACCCCTGCAGCATGGCTGCCTTCTGGGACGTGCTGGTGCTGGGTGAGGTCCCAGGTTGGTCTGTGTAGGCAGGGGCTGTCTCATAGCCAGAGCAGTGGGCACATTTTCCCTGCCTCTCCTCAACCCCTTTAAAGCTGCAGAAATGAAGCGGGATGCAGAGGAAAGCTGCCAGCAACGCAGAGAGCTGCGATCCCTGCCTAACCCGAGCATCCCTGGGAGCTGCTGGAAGGAGATGAGCCGAAACCGAGTCAAGAGCCCTGTCACAAAGATCTCTGCACGGGGCTGAGGTTAAGTCATCCCTGGAGCCCGTCAGGTCTGGGAAGGCAGCAGCAGGTTGCCCAGCTCCACCGCTGTAAAGCTTGGCAGGGGAGACAACACACAGGGCTCGCCTTCCTCGGTGGAAGATGAATTTTTAAACGCATGCACGTCGTGACAGCTGAGGACAGAAATACACCCAGAGCCCAATTTCCTCCGTGGTTCTTCTGTGAGCCTGTCTTGTGGTTGCAGCTGCTCAGCAGCTGACAGCCCACCCGGCGCTGTCTGTGCATCGTTAGCGGGATGATCAGCCATGTCCCTGCCACTGGATCTCCGTGACCTGCAGCGATGGCTGAGGCAGAGCGAAAACAGCCGGCCTCACATCTCTAGGTGGAGATGGTGTTGGACAGCGCATCCCCACCAGGTCTCTTTTGGCTTCGGTGGGTTAGGACTCAAGCCCTCGTTGACCACATCTGGAAAGAGGATGTCCCTGTATGTGTCCTCCTTGCCGTGTGCACAGGGAGCTCTGTGCTTGCTCCCGTGGATCTGCCTGTAAACACGCTGTTAATGCAGACTGGGTTGCTGCAGTGACTCTGATCAGTCTGCTAATTAACTAATGATTTATAGTCATCTTAAAGAAAAATCCTGTCAGAAATATCTTTTTGGACACCCAGCTCCTCCTTTCCTTCTCCCCTTTGTGCCCTCCATCCCTCACCCTCTAATGAAGAAAACCGAGCAGGCTAGTTTATAAATCATTGAAAAAGTCTTAACACGAGAGGCTATTTTTAAGATCGGTCATTGTGCAGTTTTGATGTAAAAACGCTGTTCTGCCTATTTACAGAGCAGTGTTTGCCATTGTGATTGTGGTGCTCCATAGCACAATGGTTGTACATCCACGCCTACCAACTGGGAGCGAGGACCACAGGGACCTTCAGTGGCCATGCTGTCTGTAGGAGGTGAGACCCCCAGCAGCTCAGGCTCAGGCTGTCCAGGGCCCCATCCAACCTGCCCTTGGGCAACTCCAGGAATGGGGCACCCACAGCTCTGGGCAGCAGTGCCAGCGCCTCACCACTCTCTACATGCTCTTTGAAGCCTGTTCCCCTCTGTCAGACTTGGTGTCTGGTTTGTTGGGAGGCTGACCTGACATCCTGGCCAGTTGCTGGTGGGACAAGGATTTGGCCACGTACAGCGGGATGTGGCGACAGGCTTCGTGCGAAGCTGCAAGCTCCTTGAAGAACTGGCAGAAAATCAGCCCCATGCAGGAGGCCGGGCTGGGAGCCAGCCAGACTTGCTGGAGGAAAAATGCCATGAGACCTGCAGAAACCGGCCCCAAACCCAGTTACTTCAGCAATCCATCACCCTGGCTCTACGCTTGGACAACCACCAAGGCCGCGGCAGTGCTCTGGCACCAGAAGGTGACATTTGAAGAGACGTCCTGGAGACCATTGCAGTGTGCCTGGCTGCGTCCCCCCTGCAGAAGTCAGAGCTGTGTGCGGGGCTCCTCACAAGGCCTCCTCCTGTCCATCACTTGGGCTGTAATTTGGGGCTGCTCCGGCTGGAGGAATGGGAGGTTGTGATGTGTGGGGCACCTTCAAGGCCAAACCTATGGGAGCAGAGGTCAGCACCTCCCCAACAGCATCTCCTCTTCCCACTAGGTGGGGTTGAGGTGACAATCAGGGCACAAAACCACCTTTTCTTCCATAGGTGAAGGCTGGTTCCCAGTCTTGAGGCCAGAAGGGCTGCCCAGTGTTTTGGGGGGATGGGGAGGGAGGTGCTGGACATGGAGGCACCGCAGCCGTTGTTTGCAAGATGTTCTCCTCCTCACTCCTTTCAGCCACGGCAAGCATGAAAAAGCCTCTAAAAATAGTGCAACACAATAGGGACCGAGCCCTGCTCCGAGCGGCCCCCGCCGCCTCTCCCCCCTTCTGCTCGCTGTAATGACCCTGCAAACACTAAATGGCATCTGAGTGCATTAAGCAGCAAACTCTCCGGTGACATAGCAATTACGGCTCTGAAATAGATTTGGTGCGTCACGGAAGATAAGGGTTTTGAAAGTTTCTGTTGTGATTATAGCTTGTAACTCCAACAAATAACAGGCTTCGTAATAAGAGGCTGCCAACGCCGCTATTGTGGTTCTCTCTCACTGATGGCACGTAAATTGCTATTAATGTCCTAAGTGTACTTGAATATGCCAGTCTCTGGGCGGCGGAGTTGGCTCTGTGTCTCTCTCTACGCGGCCTGTCATTGTGGGGCTGATAATCTACGGTAATTGCTGCCTCTTGCAGTGGACCAAGACGTGGAGAAGGGTGGGTGCTGCGTCCTGGGAAGCAAGATGTGCAGTGGGGCCGCAGTGGGCGCATGCGAGGTTGTGGGTGAGACCGTATGTCCCCCAAACATCCCTGTGTCCCCCTCCCACGAGGTCCCGTGTGGGACTTTTGGGCCCAGTGATGGATGCCCTAGAGCAGGAGGCACAGGGATGGCTAGAGCAGGCAAAGCAGCCTGGGCACGTCCAAAGCGGGATTGCTGCTGCTGCTGGCTCAGCACAGGCAGGAGTTGGGGTGGATTAATTAGCCGAGCACTGAATCAATGTCAGAGTGAGCAGGGGAGGTGGGGGCAACATCTGCTCCTCTCCAAAGGGGTCGGCAGCCAGAGAAGAGCAGCTTCTGTGAGCTGTCGTGCTTGGCAGCCAGGGCCCTGCGGCCAGCTCTGCCCTGCGGAGATGTGGGGCTTTGCATGGGAAAGCACCCATTGGCTCTGGGAGGAAAGCATTGCCTGCCTTTGCTGTGTGACCCCTTAGATGAGGAGGATGCTCAGTTGCACCTCTGGGTGGGCTGATCTGCTGCCAGCTGTGGTAGGACAGCGCTGCAGGACATCGGGGCAGCGTCAGGACCGGTGTATGTGGTGCAAGTAGGAGCTCCAGGTTGGATGTCCACTGAGCCTGAGGAAGCCGCGGGATGTGGACACTCATAGGTCCCTCGTGTGCTGGTGTACAGCACTTGTTCTGCATTTTCATAGCACTTGGGTCCAGATGGAGTTCCAGGAAGGGGTTTTAAGTTCAAAAAACAAAGTTGTTCAGTTGTTTGCTATTTTCCCCTTCTATTGGGAAGGATCCTATCATACAGTTAAAAGCCAACAGAGTTCAGGATTTCTTCAAAAAACTATACTTATTTTAAAGAGCGGAATTTCCATGAAGGCTTGAAATTCATCAAAACCTCCAGCTTTCATCAGTGCTATCCTGAGCTGTTCTTGTACTTTGGCTGTCCACAGTGGGATGGGGGTGGCAGAGCAGGGGATACTTACCCTCCATCCCTAACACCACTCTATTATCTGAATGGAGACCTGGGATGGGCAGAGACCTTGCAGTGGGGCTCTGTGCTGCCATGACTGACGGTTGCCTGTCTCTCTCCCCTCAG
Seq C2 exon
GCTAATGGAGGTTGGCAAGACGCTACTACCCCATCGTCGGTGACCTCCCCCACAGAAGGCCCTGGCAGCGTTCACTCTGATACCTCCAACTGATCTCCCAGCAAATTGCATCCCTGGCTGAGCCCAGCCCCCGGCGGGGCGGGAGGGGAGGGGGCCTCTCCTAACACCGGCAGCCAGTCAGACTGGAGGGTGAAACCAATTCAGGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003429:ENSGALT00000021887:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.749 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]