GgaINT0046150 @ galGal4
Intron Retention
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19614005-19617293:+
Coord C1 exon
chr7:19614005-19614190
Coord A exon
chr7:19614191-19617206
Coord C2 exon
chr7:19617207-19617293
Length
3016 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCTTTTTTCCCTCCATCCAGGTT
3' ss Score
11.71
Exon sequences
Seq C1 exon
AAAAGCAGCAACGTAAGCAATAGTGAGCAAAAGATTGAGGCACAGTCAGGTGCTTCAGCTGACCACCCACGCCCTGTCATTATGAGACAAACCTCAACGCCAGTCCAGCGCTCTGACCCAGAACAGATCCACCAGAGCTTGCTGGCTGCAATCCGCTCTGGAGAAGCTGCTGCCAGATTGAAAAGG
Seq A exon
GTGAGTTTTCATCATTGCATCCATAACAATGAACTCATGGTGCTTCCTTCAAAATTACCATATTAATGGCTGACACTAAATGCAGTTAGCTTGGACATGAAGTACTATGAATGAGGTCTCCTAATGGGAAGGGAGGTGGGGAGGAGAGTTTAGTTTTGCAGAGTGAACTGGTGAATGCACACACAGCTTTCTATGTTCATATATTCAAATAGCACAAATATACGGTTTTAAGCATGTGCTAAGCAGCTTCATCCTAGACTCGCATTAGCTGCAATCTTTTCTAGGCAGATAAATTGAAGTTTTGAATATTTGTTTTTTATAGTTATTAGACTTTGTCAGGTCCCTAATTCTTCATAAATGTATTTCAAGCCTCCTGCTTAGTATCATTAGTAAGATATTTCTCAGTGTTTTGTCGATAGTCCTGGTAGGACTGTTTTCCTTCACTCCCTCAGGTAAAAATTGATGCTCAGTTTCTGCACTCTCACAGGGTAAAATAGCTCAGACTTTACCAGTCTGTTATTTTAAATTTGTAACCAGACAATTTAATGATAGTCTCACACAAAACTCTCTGACTCAGCATTAATATTTTTGCGTTCTGTATTGAAGAATAATTTCTCATTGCAGAAACTTAAGAAACTCTGGGTTTTGTTTTTCTTCCCTTTCCCACTTGAAACTTGAATAAAAGCAAGTAAAATGTTGTGGGTAGATGTGAGGGTATTTTTAAATTGTTTTTAATGGAAATCTTTGATTTCCCCTACAATCAAAATATGTCAGTTGATGGGTAGATATTACAATTGCCTCTTTTAAATATATGAAGTTTTGATTCAGTGTTGCACTACAACAGTCTCTCTGAGACTTACAGATTTCCTGGTATTTCTATGCTGAGTAGGAAAACTGTTTTCTGGAAATGTTATAAGAATGCATAATTTGCCACAGCTAGATGAGCATGCTTAACAGTAAGAGTGGTACATAATGCACTGTAGTGCTGCTTTTAACTACTGTATATCACTAAGCACAAGCCACTTTAAAAGCAAGTTAAGATGAAGCAAATACTGTATTCTTCAGACTAGCTTAAAAGGTCACGTCTCTCTGTTCAACCTGATTTTTTTTTTTTCCTCTACCTACCTGGTTGCATAAATATACATAGACTGCTCTGAAAGTAATGCCTCCTATTTATTTCCATGGAAACTACGATAGATACAAAGAACATAATAACAGTATCTAATATAACAAATTATATCTATAAAACACTATTTTTCAACATAAGTACAACCATTATCTATACATTTTCACCAGCAATGAACAGAACCCTATATGCTGTGCTTGTAAAAATCTGCACTAGCACAGGTGACCCACTGCCACTGCTTGCTGAAATGCAGCACCCACCACCTCACTACACTTACATCCGCTGTTGGTCTTCATAAACGTTCAGCAACAGTTAATGAATGTCAACAGATGCCATTTTTTCTGCAAAGAAGAATTTAATGATACACCTTTGCTTCATATGCACTTTCACATCAGACTGCCCCTCTGTTGCTATCTGTCACGTGGTGACAAAATGGAACAGAAGATAGGTGGGAAGGTTCAGCTGTACCACCACCATCTGCCTCTGATATTATGAGCCAATGTAATAAAATAGGAGGCATTACTTTCAGAGCACCTCTTGTACATGTATTTTCAAGTATTTTTACTAGGGTATTTTTTCCAATGCATAATTACATTGTGAATAATACTTAATTCTATTTATTTTGCATAGTGTATGAACTTTCTTTTATGATTTTATGGGAAATATCTATAGGCTACACAGTGAGTTGCAAGTATTGTATAAAATAAAATTCATGAAGTGCTTTTCAGAATTCAAGAAATCTATAGTTACTGAACGTACCTAAGACAAAACATCATATGGTTGTTCATTATTTTCTAATAGAGATGTTTCAGCGTATCTTTGACCCACATAGTCCTTATCAGTCGTACATGTATGTATGTGTTATGAAGAGTATGGTGATGACTAAAAACCTTTTTCCCCCATCCCTCTCTCACTCTCCAGTGAGTGGGAAATGTTCTTTCCCCATGTAGCATCTGTAGAGGCTGGGGCTGAGGACAAGACTGTACTTTTAAGGAAAACCAATTAGAAGGAAAGCCTGTAAGCATGAAGAAGATGCTGTAATGTAGAAGGCAACAAAAATAAGTGGGGGAAGATCTGTCAGGTTCCTGCTTCTGCATTTACCTCTCATCATATTCTCTACTCTTTCAGCAATATGGAGTCATTTAGTAAAAAAGGGGGGAAGAAAAGCTGGCACCACTATACAAATCCTCTTTTTTCCCTGTTTTACTTAATAAGTTGTCAGTATGCAATGCCAAGATCTGTGGCCTTTTGTGTTTCTGGCTTTTTACGTTGAATAGAACCCTCGGTAATTATGAACCTAAAATGGGTCAACTGAGGTTTCTTTTTAACTGTTTTTCTCTTCAGAATGTTTTCATTTTGTTTAGTAAACTCTGTGCTGTGGTATGTTGCTCGCATGGCTCTCATTAACTCCAGCTGGACTTACTGGTTTATGCAGCTACAGTGAAAAGCAGATCTTTGCTATCTATCCTTAAAGGTGTTTGCTCCAAGAAACATTCCTATGTCATAACTAAATGTCAGACTTTGTTAGAAATCAGTTCTGTTTGATATTTTATTTAAAATATTTGTTTTGAATGATATTTTTTTCATGTATTTCTTTTCAACCAGGTCCAGAGATAGAAGAAAAAAAAAATTACATGTTTATAATAGTTATGCACTGAAGTTTTTGACAGAAATGTTTGAAGTCACTTAAAAACATATTTAATGCTACTTTTGTAGCATATGTGCTTTGTTCAGAAATGATGTAGGAGGTGGTTTATTGTGTGAGAAGAGCGCTAACTGAAGGAACAGTATTGTGCTTTTCTTAAGATAATACCTCGTAACATACTCCAGACAGAAGCATGATAAAAATTAGGTTAATATTTCCTTTTTCTCTTTTTTCCCTCCATCCAG
Seq C2 exon
GTTGGTCCTCCATCAAACACTGTATCTGTCAATGGAAGAGCCAGGCTTAACTATTTGTATTCAACAGAAGCGAAGGCGAATCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068:ENSGALT00000018021:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.821
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]