GgaINT0047426 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:19971549-19975058:-
Coord C1 exon
chr7:19974922-19975058
Coord A exon
chr7:19971635-19974921
Coord C2 exon
chr7:19971549-19971634
Length
3287 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTTAATGTTTTTCGTGCAGAAC
3' ss Score
8.55
Exon sequences
Seq C1 exon
TCTGAAACAAACCTCAGTAAAGAAATGGAATCTGTGATGAAAGACATAAAAAGTACCACACAGAAGAAGTATACAGATTACAGCAAGAGTCCTGGATCCCCTGACAATGACTTCCTGTTTATGTATTCAGTAGCCAG
Seq A exon
GTGAGTGTGGTTTTTTTTTTTTAATTTTAAGTTCATTGCTAATGGTATTACCGAACAAGTTTTCTTCTTGTCAGTAAGTAAACTTTAGAAAGTATTGCACTCTCACAATGCGCTTTTTGAGCACTTAGTACACTGAGATTTTGTTTTCTGATTTTCATATGCAGACGTAGGCAAGATGGAATGGTGCGTCTCTGTTCATTTTTAGTATTTGCAGCAGAGGTGCAAAACACGGAGAGCATCTCGTCTGCTGCTCATCTCGTTTGGTTTTTTATTAAAGACTTTGCTCCATCTTTCTGGTTGAATTTATTTTCTTCTTTCCTTTTCAAACTGTTAAATCTTCTTTGCTGTTATTCAGAGCATTAGATTATTTCTGTATCGCTGCTGTATTGATGCTTTTAAAATCATGAGATGTTTTTAATTGTTCCATCAGACATGAGTTTTCTTTACTTAATTGGGGATCGCAGAAGGAGCCTTTCCTACATCAGCTGCTGGAGTTCTCTTTTCACATGAATAACATTTTCTTTCTCTAGAAAGTTTCAAAACTACCGGTATTTTTTCTGGGCTGTGGTTCCACACATTGCTGTCAGTATCACAGCCAGGAGAGCCAAGAAAAGGAAATGGTTCCTGCTCTGGGTATGCTGTTAATTTTAAGATGCTCTGAATAGTTAAACTTAGTATAATACAAGGCTTTCTCAGAAGATGATGCTGAAGTTAACCAAATAATTTTCCAGACCCTGACTTCCCTAATTCCTGTAGGGAAGCTGCTGACTGCAGGCAATGTGCAAGAATGCATGTGATATAATCCAGTAGTATTTCGTTTTTTAGTTCTTTGTACTCTTCCAGATACAAGGTAAAGAAACAGGCAGTATCTGCCCACCCCCTTGTTTCCTTGGTACATTCTTTCTTTCATGAAAGCCCACAAAGAGGCATGAAGGTGAGCTATTTTTTAATTAGGAGTCTGCACAGCTGAGCAAAGTCTGTCTTAGTGGTTTTTTTTTTTTCTATGGGTAAGAAGATAAAGCCACTGTTCTACAAAATTCTTCGCTCCAGTGAATGGCACAAAGATTTTTTTTTAGAGGAAACTGTCACTTGTATAGATTTTTATCCTTCTGTTTTCTTCATGTTGAGGGGGCTGAGGTGAGACAGTGGAACACAGATGTCTCTGAAATATCCTTTGTTATCAGATACCAGATATCTGTGACTGATACCAGATATCAGTTTTTCTTCTTTGAGAGACTAGACAGTGAGAGTTTTGTATCCCTTCAGTAGAGAGCAGGTGGTACACAAGTTTTTATTGTCAGATCCTCCAGGCCAAAGGGAGCTTGAATAGGCAGAAGATATGCAAGTTCTTCTCAAAAATGATTAGGGCTGTGTCAGATGTAGACCATCTTACAAGAAGGTGTGTTTCAATTTAACAGAAGATGCTTTTCCTATTGTGTGCTATTCCATCAAGGCTTCAGTGTTTCTCAAAGGAGCTGTCTTAGAGGAAAGGCTAACGTTTAGCTTTTCGTGAAAGCTGAACTATAAGCTCCTGACTTTGAGGAGCTTGGGGCAGTGGAGAAGTGTGTGGAAAAGGGAGAAGTAGTACACCCTGTGTGAGGGAGTATGTGATTCCAGAAATCTCTCTCTGTACGTTGCACAGAGTGAACAGTGCATCAAGAAGAGTTTCTTCAGGATGGTCTTTAGAGTTTTGTTTTGTCAAAGAGTACGTATGTCTTGGTGAGAGGGAAATTGAACATTCTGGATCTAAAAGTGTTCTTAGACATTGAGGTAGTGCCTTTTGACTTAATTTTTTAGAAATGTTTTAATGAGAGGCTGCCATTAATTTTGTTCTCCCAATTAGTTATCAAAAGACTTACAGAAATCAAACATACTGGTTTCATTTGTATTCCCTTGATGAACTAGCACGTACTGATGTACAGTTGCTATTTTGTCCACTAATATGAAATCCCCGCTTCCTTGCTGGTAGATTTTTAGAAGTTCAGTGAGCACTGCAAATCGCCTGAAGAGTGGAAAATTCCCCTGTCACACAGATGCCCTTATCAGCAGCAACCAGATGGAGCTCTGAGCAGGCACATTATCAATGTTAAATTGCCTTTTTTTCTGAGTAGAGAGGATTAAAGCATTCCTTCAGAAATGGGTGGCATAAGCTGCAAACTTAGGCACAGTAATATTCTGAAATGTTACTATTTTAGAAATGTATGAAAGTGTCTTAATAAACACTGCATATCAAATATATATTATTCTTTCAAACTGATGGAGCTGAAATTTTAAAGAAATATTTTAAATAAATAGTCATCCTTTGGTTTCTTGGTAAATGTATACGTGTGCATGTGGGGGATGTTCTAAGTTCAATATATTATGCATATAATTTTCAAATAGATTTTAATGTGTATTCAGTCATGTTGTATTGAAAATTAAGTTGTTTAATTTTATTTGAAGGACTAAATCTGAGCTTTTGCATTTTGGATTAAATAAGCAAAATAACATTTTGGAAGTACAGAGTTATTCCTTCCTTCTAATTAAAGGAATGTATGTTGATTTGTTAAAACAGCCTATAAGAGAGTGTATGCAAATTGTTTACTCCGAATCTTGAGGGTAAAAGATAATGCAGTACTGAAACATCCAATTCCAAAATCAAATAAAGCTATTGAATATGGCTTAAACAGTTGATGCCTAAGTATCAGATTACAATAATACAGAGAAAGCAAGCATCAATGTGGCATGCAAAGATTTAGTGACAGCTCCTGTGTCATACTAATGAGCTGCATGAATACCAGTGTTTCATTCAAAATTAACCTCTAATGCTTTTATTAACTAACTTATCAGCAAAGATCAGTAGTTCCATTATAGTCTAAACTGTTTTCATATTTAGAGGCTTGATGGCATACTCGTTGTACTGGCTGTTTGTTTAAAGCAAAACAAAAGCCCAGCCTTTAAAGAGAGCACCTTTCAGGCATATCTGATTGACTGAAATTTAACAAAGCTGTGCATAAATTCCCTTACTTTTAAGGAGTTGTGTGGGCAGAAGCTTCCGTATTAAGAGAGTTGTAATTGAGAAATAAATAACAGTTAATATGGGACTTATTAATTGAACCATTTTACATTACATATGGCAATATCTTGATAATGTTTGCTTTATCCTGAGTCATATTTTGACAGTATCTAAAACTAAAGATAAGTTCATATTCTTGAAATTAGTATATACACTGGGAGTTTGTGGTGACTCTCATGCCTCTAGAAGCCTGGAGAATGTTATTCCAACACTGTTAATGTTTTTCGTGCAG
Seq C2 exon
AACAAACCTGGAACTTGAGCTCGTCCATCGGGGTGGCAATTTGTGCTCAGGAGGTGCAAGCACAGCTGGAAAAAGATCATGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608:ENSGALT00000015660:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0080420=Syntaxin=PD(49.0=54.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]