HsaINT0176824 @ hg19
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170865314-170871876:+
Coord C1 exon
chr2:170865314-170865450
Coord A exon
chr2:170865451-170871790
Coord C2 exon
chr2:170871791-170871876
Length
6340 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
ATATAATGTTTTACTTACAGAAC
3' ss Score
8.32
Exon sequences
Seq C1 exon
TCAGAAACAAATTTAAGTAAAGAAATGGAATCTGTAATGAAAGATATAAAAAATACCACTCAGAAGAAATATAGAGACTATAGCAAGACCCCGGGCTCACCAGACAATGATTTTCTCTTTATGTACTCTGTTGCTAG
Seq A exon
GTAGGTATATATAGTGTATACTTTTTAGTTTACTTACTATTAATAGTTGATTTTATTATTTAATAAATATTTGTTTTATTTATTTAAAGGATGCATATTTTTAATATCAGTTGAAATTATGGCTAGTTTTAGTGCCTGCTAGGATAACTATAACTGTGCAGCTTTATTTCCTGAAGAGGTTTTATTTTAATGAAATATTTGCATAAATGTTACTAAACATTATAGTACATGGGGGAAAGTATGTTACTAACATTTTGGGGCAGATATGTACCTCGAACATGTGAGTATTATCTATGAGACCTGTCAAAAAGTGATAATACTGAGAACTAAAACGTTGTAATATGTTAAACACTTTGATTTATGGAAAAATAAGAACAGTAAGAAATAGAAGAACTTTGTTTTAAATAGAAACCGAAAAGATCTAGTGATAACCTAAAAGACAGGAGTTTAGAAGAATCAGATAAGGGAGAGGAAGCAAGGGATCAGGCATGTTCTAAACCTCAATTTGTAGTGAGTAAGGGGCTCAAGAAAGCTGTTAGAAGTGAATGTTTCTCATCTTTCAGATTAGGAAGGATTAGTCTAATTGTATGCAATACAGAAGCAGTAGTTCTAAATAGGAATTTTGGAAAACTTGAGTGAAAATGCAGAACCATAAAAGCAGTAAATAGAGGAAAAACAGACACAACTAAGAACTTGTAAATGCATTCTGCCAAAACTGACTCTGTACATCCTTGAATATCTTTGGAAGCATACTTTATATTTTATCTAAGTAGTATTGTAATAGGTAAGATTTAGAGAGGTAATGTGACTTGAGGTCAATACAGCAAGTCTGTGGCAGAGTAGGATCTCTTGAGTCAAGGTTTACTGTTTTTTTCAATTGCTATCTTCCTTTTTCCTCTCCTATGTTTAGCTTTTATAGGTTCTATTATGTATATAGTTGATCATGGCTATTCTCTCTGGTCCACTCCTGGAACAGAGGGTAACAAAAGAGTAAATGAACTATACATAGCCTTTGGAACCCAGGAGAAATGGAACCAGATTTAGAATAATTGCAGCAAGCAAATTAGAGCTCAAGATAAGGAACATTAGTTGGTCTGAGAATGCAAATACTGGACATGGGTTGATGTAAAAGGATTTAATGGATTGGAAAGTAACTTTGTAGTCTATATATTCCTAGCCTCTTGTTTATCTAGAATGTTTTTGGGGAAGACATAACATTTAGTATTTTGTTTCTGGAGAGTTACTAGTTACTACATTCTTGCAATAAAAGACACTATGTGAAAACAAAACAATATAATTTAACTTTGCCAGGGTGCCAAGGTTTTACAGAACTTCCATATGATATTGTGATTATAACATTGTAGACGATTGGGTTGAATATGGATCAACTCAGTTCTGTTATACATATTTATACACAATCACAGACCTACACACATTTATGTTGCTCATTTATTTATGCCTTTAATTTTATTAGAGTTGACCTTTTAAGAAAATCTTTATTGAATGGGAATAATCTGTCATTGGAATTTTCCTGTAGTATGATAAATCAAACAATTTGATTTAAATATAATTTAGTGGAAGTTTTAGATCCTTATTTCTTGGTTTAAGTTTGTAAGTAACTTACAGAAAAAAGCTTGCAGTGATAGTGGGAGACCTTCTGGATCAAGACATTTTGGTTTCTCTATTTTTTAGAGAAGCAGGGACAGATGTCGAATGCTTTACTAAGGTGTAAACGGAGAAACAGAGAAAATATACTTCCCCCATCCTTTTCTGAAACTTAATAAATTCTAAAGCAGCAAAACAATAATTCTGAAAATGAGTGTATATAACACTTTAAAACTTTATTATCTTTTGCTTGGAATTCCCCAAAATATTGCAAAGCTCTTCCAGTGAGGCGGCATTCCTTCTCTAAGTTTTACTTAGTCATTACAAAGAAAACAAAGGCTGGGCATGGTGGCTCACACCATAATCTCAGAACTTGAGAGACCAAGGCAGGAGGATTGCTTGAGACCAGGAGTTTGAGACCCGCCTGGACAACATAGTAAAACCCTATCTCTATGAAAAATAAAAAAAAATTAGCTAGGTTTGGTGGCACACATCTGTAGTCCCAGCTACTTGGGAGGCTGAGATGGGAGGATCCCTTGAGCTACAAGAAATGAGAGGTCAAGGCTATAGTGAGCTGTGATTGAGCGACTGCACTTCAGCTTGGGCAACAGAGCAAAACCCTGTCTAAAGAAATAAAAAATAAGATAAACAAATTGACTCAGAAATTAACAACATATATTGAAGGAAAAAAGTATGTTGTATTTAAATACATTGTAATTTTCTCAAAACAGGAAACCAGGCCTTTTATGCATAACATATAACTTATTTATGCATAACATATAACATTCCTAAAAGGTGAACATTAAAATATTTAGCAATATTTAAATATTTAAGTAGAATATTTAGCAATAAACTTACTTTGAATTAAGTTTTGAATTAAATGTAGTGATTTTTAAATGTATAATTCATTAGAACTTGCACATTTATTTGTATTTAGTATTAGTAACGTGAGTGGAATACAACCCTCATTTCTTAGAGCTGGATTTCTCCCTGCTGAATAAGTAATTTTGTTTGCTCTTCAGAGGGTTTGAATTTTGGATATTTAGAAACAAAGTATTTCTGGTGAGTTTTACAGCTTTTCTTTTTTTTTTTTTTTTTGTAAGACAGTACATGTCTTTTGGTTTTAAATTTTATTTGCATGGTGAAGCCTTGGAGAATTTTCTGAGGGTATCAGAGAAGAAACTGTTGGAAAATCCATTCAAATTTAAAATGATCTAAAAATTAATCAAAATCATTACATTCAAGTTTCAATATATTTCCAAAATTTTCATTTTATTACACATGTCAGTCATCTATACAGATAATGGAAACCAAATTGGGGGGAAGAAGGTTTTCTTTTTTCAATACCAATCATTATTTTGTTCTTGAAACAATGAATGACATGAATTTCAGTAACTGATTTTTCCAAGGATTTTTGGACTCAAGTTTCATATAGTCTAGAGATACTGGTGAGTAGCAGGTGGTTTGTATAGAGAAAAATGGAAAGAAAATGAAACATAAGTAACTGCAATGTAGGTGGAGAGACATCTTTAAATGGTGGGTACTCAATAGAGTGAATGTACCTTCATAGGTTACTTTGTAAACTAATCATGTTCAAAATAAAAGGGACGCTTGCTAAATACCAAATTATGAATCTTTTTAAAAAAACAAAAAATTCTTTCCTAAAACAATCCTTTTTTGGGGCTTGGTGGGGTCAATACTGGGTTTAAGGGAATGGAAGAGTTAGGAAAAGAAAGAAAATAAACTGCAAGGGCTAAAGAGAATCTTATAATTGGTTACATATCAAAAGAAAGATGTTGTCAGTTCCCATTTTTTTTCTTTTTAAGCATCTTATCAGGTACCCTGGGGATTTAGAAGCTATATTTGAAATAGTCCCTGTTCTCCATGAATTTACAGTTTAGTTGGAGAGATGGAACTAATATAACATCAATCTATATAACAGAATATAATTTGTTTTTAAAAATATCATATAGAGAAAGCACTGTAGAACTTCTAAAGGGAAGATGAGCAAATTGAAATATAAAATATGTGTAAGTCCTTCTTTCTGTCCCAGGAAAGCTTCCTGGAGAAGTTAAAAGTTGAATTGCCTCTTGTATAATATAGGCTGTGGTATGGATGAAGATACTGGTTTTTTTTTTTTTTTCCCCCTGAGAAATTGAGTAACTTGCTCAACTACTGAGTGGTAGACTCAGGCCTTGAACCTAGATCTCTTTCCAGAAGCTTTGCCCTTTTCACCAAACCAACGTGTGTTTGAGAATGTGGGGTGTGTAGTGTGTGTACACACGTTTGCTTTTCAAATTATAGTCTAAAATAGAAGTTAGTGTTGAATGGGGGGATTGAGAGGACAGCATACTTTGGTCATGCAAAAAGAAGCTGGAGCATAGTTAGAGGGGTTTTTAATGTGCACATCTAGGTGGCCACTAGGGTAGGCTTTAAACAGTCTTTCTCATCATTCTTTCAAATGTAGAGATTTTCGCCTCTTTTTTTTCTTCCAAACTAATTTGAATGTATTTGTGTTAGAAAATATAGAAAAGAGTCTGCTTTTCTTTGACAGCAAAAAGCTCGGAAAACTTCCACTCCCAGCATATCTTTATTTTTGCATCATTCATTGAGGAGGAAAGAAACATAATATTGCTGTGTGATTTTCAGCAGTCGGACATGGGACATATGACCCATTTGTGTGTTCTTTAGCATGTCTCAAAGGACCAATTTTGACATATATGAAACAAAGAAAAGTTGGTATTTAGAGCCATATTGATTTTTAAAATCCTAGATATTGCTGGATACAGTGGTGTGCGCCTATTCCTGGATACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGCACAGGAGTTCAAGTGCAACCTGGGCAACACAGCAAGACTTCATCTCTCAAAAAAAATTTTTAAGAAATGTAAAATCCTAGATATTATTACACATTAATCCTTTGGATAGGTAGTTTTTGATTTTTAATTCAGAAAGAATATTGCATAGGAGATCTTCCAGTCATAATCTGGAATAATTAATTAGATTTTACTAGTTTTTTTCGAGAATTCTTTACAATGAAATTCTTAGTAATATGTTTGTCATCCGTTATATTTGGGGATTGAGAAAACAGAATTGTTCTTATATTTATATTTTAATAAATATTTTTGCAAATATGGTGAAATGTTGACATTCTGGTTTTGACATTCATTTGTAAGTATTGTTTGTGTTTCTGGTTAGCTCTCTTAAAAGTACTATCTAGGAAATCTTAGTTTTTATAAGAGAATATAGCCATTAATTTTTTTCTACAGATTAGGCAACAGAAGATTTGTGAAAACAAAATGTATTGATCTCATTTATATTCCCTTGATGAAGGAACACATGCTGGTCTCCGCTCGCTTTCTGTCCACTAGTATGAAATCCTTGTCCCTGCTTCCTTGCTGGTAGGTTTTTAGAAGTTCAGTGAGCAATGCAAATCGCCTGAAGGGTGGAAAATTCCCTTGTCACACAGATGCCCTTATCAGCAGCAACCAGATGGAGCTCTGAGCTGGAACGTTATCGGTGTTAAATTGCTTTTTCTCCCACCCTGAGTAGAGAGGATTAAAGCATTCCTTTAGAAATGGGTGGCAAATGTACAGACTTAGGAATATTAATATTCTTTAACAATTTGCATTTATAAGTAAATACATGGAAATATAATCTCCAAAAAAGTCCATGTTCAAAATTCAGCCAAATCAGTGCAAAATGTTTTGTTTTAAATAAAATAGGATAATAGTCTTTCATGAATTCACTTGCAAAGAGTAAGCTTGAAACTGTTTTTTTTTCTTTTTTTTTTTTTTAAGTGGGAGACAGTATCTCACTATTAGGGTCAAATGCATATTAGGGTCAGTTTTGGTTGTAGAAAATAAAGGTATGTCTAAGTGTATTCATACTGTTGAAGAAAAATACAATTTAAATTATTTCTCAGAGTTGTCATTTATTTTGGCATAATTAATTGGTTCTTTTACTGTTACTGTTTTTGGGTAAATCCTTAGATTCTGCATTAGTTTGATTTTTGAAATGTTGATTTATTAAATATTGCTATTTTGTAAGCTAATAATTGCTAAATACCTTGCAATTTCAGGTCTGTATGAACAGTATTGATGGTTAGCCATATCAGTAGTTACACAGTGTATTTTAATGAAACTAGTTTTAGAAGTCCGTAAGAGAGACTGCTGTTAAATTATATGTGTTGTTCATAGCCATTTCTATATTAGTGATTTTGTTTCTTAATATTGATTTCCAGATACCATCTAACCTCCAATGAATGATAACCATTTCTCTGATAGAAAAATTGGTATGCCTTTGTGTTTTATATGGCAATAACCACCTACACAGTGGCTGACGTTGGAGTAAAAATTCTTTCTTCATATTCATATGCAGGTTTATGAAATATGTTGCAGTTTTTTTTTTTTTCTTAAGGCCTAGTTTTTAGTATGTGCCAAGAGTTGGGACTTTGCAACAATTACACCATGATGTGTGCAATTTTTTGCAGGTGTAAATATGAACATATAAGTAAGGATGGATAAATTGTTCCCTTTGTATTTCTAAATATCAGATAAATATGATTATTACTGATACAACATAAAAACTGCTTTTGCAAAAAATAAAGTTGAAGAACTTTATTTTTTAGGTTGATTCAGACATGTCAATAAAGCAGATTAATAAAGAATCTTCAGTTTAATGACTGAGATATAATGTTTTACTTACAG
Seq C2 exon
AACCAATTTAGAACTTGAATTGATTCATCGAGGAGGCAATTTGTGTTCAGGTGGTGCAAGCACAGCTGGCAAAAGGTCTTGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-UBR3:NM_172070:29
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0080420=Syntaxin=PD(49.0=54.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)