GgaINT0047658 @ galGal3
Intron Retention
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21070912-21075933:+
Coord C1 exon
chr7:21070912-21071178
Coord A exon
chr7:21071179-21075812
Coord C2 exon
chr7:21075813-21075933
Length
4634 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CTTTTGTTTCTCTTTTTCAGACT
3' ss Score
12.07
Exon sequences
Seq C1 exon
ATGGAGCAGCCAGTGCTTGTACCACCAGGACCAGACAGCTTCCAATACTTCACTAGGGAGTCTCTTGCAGCTATTGAACAACGCATTGCTGCAGAAAAAGCTAAGAATTCTAAACAAGATCGTAAAGACAACGATGATGAAAATGGGCCAAAGCCAAACAGTGATTTGGAGGCAGGAAAAACACTTCCATTTATATATGGTGACATTCCTCCAGGAATGGTGTCTGAGCCCTTGGAAGATATGGACCCATATTATATCAACAAAAAA
Seq A exon
GTGAGTCTAATATCATTCCCATTCTTATGAAAATGTTTGGAGAGCTTTATCATATTTGTTTCATTCTCTTACTATGACAAAAATAGTTTAATCGTCTGTTAACTGACAACAGTGTGGGAAAACATCATTCTAATAATGTGGGAACAGCTAAGCATTGTTAAAATAATTAGCGTACAAGAGCAGAAAATGTTTGATGCCATTGATAGATATGCATTCCACCTTCCAGAAAGTAAATACTGAAATTGTATGGGTCTGAAGAAGTGATACAGAATGAAGGAAAATTAGTATTTGCTAGAAAGAGTTAGGACAAGTATATGGATTAGCAGATGCCACTGTGGCTCATCTCTGTTAAGACCTCTGCAAAACTATATCTGATTCATCCATAGAACATTTGTAGGTTTGACTTCCAAGCATTCAAATAGCCTATAAAAATGGTTATCTATAGTGTTCGTCAAACGATGCTAATGATCATATTCACTGTGTTTTTTTCAGAAAATCTAATCAGCTGTACAAATACCTTCTTTATTCCAAATTTGAGTCATGAGAAAAATCATACATCAGTTGCTTCATACGCGTGTACTGCATTGCACTCATTGATCTGGTCGTGGGTTTTTTTTTTTTATTTGTTTGTTGTTTTTAGTTTCTTTGGAGGGGGAATAGGGAATCTTCTTTTCTGGATAATATGAATCAGCAGGGCTGAGCTCTTCCCTAAAGATTTAACTACTAAGTAATAATGGAAGTCTACCACCTATTTTGCCATACTCGGGCAGTTATATTTTCAGAAGGATACTTTTCACTGTACTGCATATGAGATCAAATTGAAATTATGTTTTGGTGTCTTTGTTTCTATGCAAAACTTATCACCAAAGAGGATGTATTCGTGCCCAATATTAACTTAAAGGAAAAGGCAAAAATAGCACCTAATAGCAGTATACATTTGCACTGTACTTTAGATAGCCTAAATGCCAGCAACTGTACCATGGGAACAAAATTTGTCTATTACAATTTAATACCCCTCCTTCTTATGGTTTTATTATAATGAAGTACCATTATACAAGATGTTCAGTAATGCTGGTCTTTGAAACTGTTAAGTTTAGCATTCTAAACCTTTGCTCACTTTTTGTATTCTACTCTTGTTTTAAGTGCGAATCTCTATGTTCCGGACACAATGGCAACTGCCTGTTCATGGTGAAGCTGCCATCACAAAGGATCAGGGAGGTTCATATCACTATCTGTTGAGAAAGGATCAGCTGGAACCCTTTCAGATCCTGATGTGCAGGCATGCTTCAAAATCTGGTCCTTTCTTACTTTAAAGTCTGGCTATTTTGTCTTTGCCTTGCTGCTTCATTAAAAAGGAGCAAAAGAATAGCTGGAACTAAATGGGCCCTACTTCACTTTCCTCCTGCTATAGTGTAGATTTAGCATTCCTGCTGATTGCCTCTGCCCACACTGCCTCTTGCCAGAAGGATGCAGATTGATGCCTGTCAGGAGAGCTCCGTCCTTTTGTCCTTGGCTACACCAGTTGCCTAATCCTATCAAACCATACCTTCTGGATTCCCAAACTGGATCTGTCTTGCAGAAGGAAACAAAAAAACCTATAAAATTATTCTATGTAACATCAGAAAAGGTGAATGCACTGGTGATCTTAGATATCTTTGGTGGTTTCAAATGAAAGAATTTTGAAGATAAAAGTTCAAGTAACACAAAAAACTAAGGTCTAGCTAGAAAAAAATGCTTTCAATAGACAGCCGCAAAACAAGAAAATACCAATTTCAGAAATGCTACAAAGTCTCTTGTGCTAGCCCTCTCCAGGGCTTTCCCTGAGAAGCTATTTGGCTGTAAGACTAAGAAGCTGGCACTACAGAAGGTGCTGTGGGTTTTGATATAGTGTTTATCTAGCCATAGGAAGTGGTAATGCAATGCAGTAGTGCTCAGCCTTCAAGAAACTGCTTCAAAGCCAAATGGAAGGAAAGAGAGGGGAAATAATGTTTAAAGAACTTTCTGTCCTGACTGGTTCTTGGAGGCTGCTTTTGTTTGGCTTCTTTACTCTTGGATGCATCAGTTTGAAATACTCTTCCTCCTCCTTTGCCCTGATAAGACTGTAGTTTCTCAGTTTGGGTCAAATATGGCAGAAGTTACGGAGCTGGAAGCCAGGTTACAGGCACAAAGCTGCAAATTGGACACTTCTCTTTAGGTATTTCATTGAATTTACATTCACACTGGAATACTTTCAGTCTGAGTCTTTATAACATGATAAAACACTTCATGAAACATAAACCCTGGAAAGTAAGCATAATCTTCCATATATGAATATGAATCTTATAATTTATTTAGAATTTATTTGGTTTTTCTCAGCATATGTCTACTTTGTCCTGGCAGATTTGGGTAGAAAGTTTCATGCTCATCCACACTGCCTACACACTGCCTTGGATCTGGGTTGAGACTGGGGTGCAAATGCAGGAAACTTACACAGGAGTTGGACATTAGCTGTAATCCCTGTTTTCTGCATTTTTAGGAAAATTCTCCTTGAGAGATGAGATACAATTTTAGTTCATTTTTAAGGCTAGAAGTCAGTGGACCAACGCAGTCATTTTCAAGGTTCCCATCACAGAGATGTTTTAGGTGAAAAATTAAAACCAAAATAGAAATTGTAAACCTTGCTGGTTCTGCTTATGCAGGGCAGCAGAAAGTGGAACAGCTAAAATAGCAGCAGCTTCCAACTGAAGCTGGAGTGGTGCCAGCATGCTGTTATTTTCCATAAGGCATGTTAAAAAGAGATGTATGTTTAATATGCTTGTGTTCAAAGATTTTTAAAGAGATGTAGGTTGGCTAAATGTAGGTGGTGTAGTTTTAGATTCAAAGCTAGTAGGAAATGTGATTTTTTATGTACTTTCTCAGCTACCTCATAGCTACAGAAGCTGTTACTGTGAGCTGTGAGGCCTGGGGGCTGGGGCCAGACCAGGGAGGGAAAACTCACCGTGCCTCTTGGTAAATGTACCAAAGCCCATCATTCATCTGTCTGGCTATTCGCATATTTAAAATGAAACCTTCATTTAAAGTCAAGTCAACTGCAGTTACCCTTGAAAGGTCATTTTTTATCTGTAATCTAACTGGAAATATAATTTAGGAATATTAGCTCAGTTCTTATTCTGTTGTTCAATTTCATCTGCAGATTCTCTATTTCTGTGCAGAAGCAGGGAAAACAGATACATCTCTTACAGCTTTCCTACACATCTTGAGTTTGTGCTCAAGATCCAGTGTTAATGACACTTAGTATTAAGGGCTTTGATCTGTATTGCCAGGTGTACTGCATAGAGCCAGGACAGAGGCAGCTCAGGGAAGAAGACAGCAAGTAATTTAGGGCTGGGAGAGCTTTTACTCAGTACTCATCCCCTTCTTTTTCCTCTGCCTTCTGTTTTTGGTGTCCACCACAGACTTGTGGAAACCCTTATCCTCTGCCTTCTGGATGCTCCTAGCAATTGGTGTCGGTACTTCCTGGTCTGTACATACTAAGCATTGTGAATGTAAGCAGATTGAAGAACTATCTTCTTTGAAAATATTTGGCATGTTTTTCCAGACTGACAGCCTTCCCAGAAATGGTTCTGTACGCTGCTTGCCATCAGTCGGTGGACTTTATGTCTCACTCCACACCTCACAGATACCACAAGAGATCAATATCTCCTTTTTCACATTTCCAATGGCATCCTAGCTTACAGCTCGCTTCTTCAGCAATGTAGTGATAAGCAAGAAAGCTTTATCATAGTATGTCCAAGAAGTAAGCAACCCTAACAAAAAAAGAAAAAGCATTTTTTGAGATTCATCATTCCTGGTTTCATCGGTACCTTTAATTCTGCTTGAATTTAGGCAGTAATTCTTGTGCATGCAGATTTCCTCCAAATTACTGATTCTTCCTTCTGCAGTGCTTTTTGTTCTGTTTTGTTTGTTTCTACAGCTGAAGATCACCTCAATGCCACAAAGAGACTTGGCAGTCTGCATTTCCAGTGTTGTAGTGTTAATGTTGTTGCAGCCACAATGGGCTGCAGCATAAGCAATTTTTTTCAAAGTTTCCCTAAACATTATACACTTGTTAGTGGTTAAAATAAGATCTCACATGATGTGTGCGTTCTGGGAAAGATTTACACCTGTAAACCACAGTTGTGCAGGGTGGTCTTCTGAGATGCATCTCCTGTTCTCCTCAGGTGAAGTGTACTTGGATGCCCACAGTCCTCAGAGATTCATGACTATGTGGGTTATTGCTATTTCCCTCTATCCTTAGCTTTTCCCTTACTTATGGGAAAGCCTTTCCCTTACTTATGGGAAAGTATAAACGCAATTACAATTTCAGTTAATTGTTTCTGCATCTTTTGCTACAAGTAGATTATATAACTGATATTGTTTAAAAAAGCAGTATTACAAAAGCATTAATGAAATGAATGTTCTATGTTTAAAAATATATTTTTGGACATCAGGTAAGTACTGGAAGTAAGTTTTATTTCAAAAGTGAGTCATGCTTTTTGTATATTAACTATTCAAAAATTCATGAATTTGCTGACTGTTTAAAATGAGAAAAGGTTTAAAATGAGCATCTACACTGAATACACACTTAGAAAATGTCTTTTGTTTCTCTTTTTCAG
Seq C2 exon
ACTTTTATAGTATTGAATAAAGGGAAGGCAATCTTCCGATTCAGTGCCACCTCCGCCCTGTACATTTTAACTCCATTCAATCCTCTTAGAAAAATAGCTATTAAAATTTTGGTACATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943:ENSGALT00000017814:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]