GgaINT0047967 @ galGal3
Intron Retention
Gene
ENSGALG00000020737 | KLHL23
Description
NA
Coordinates
chr7:20048728-20049723:-
Coord C1 exon
chr7:20049571-20049723
Coord A exon
chr7:20049033-20049570
Coord C2 exon
chr7:20048728-20049032
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GTGTTCCTTTCTTCCTGAAGAAT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTGTTGGGAACGCCACCGCCTGTGTCCTGCATGAAGTCATCTTCGTAACCGGCGGTCACTACGGCTACAGGGGAAGCTGCACCTACGATAAGATCCAGAGATACCATTCGGGTAGCAACGAGTGGAGCATCGTCACCACAAGCCCACATCCAG
Seq A exon
GTAAACAACAAGCTCTGTAATGTGATGTCTTTGTTCCAAACTTTAAACCTCCTTGAGTGTTCCGACTAAAAGGAAGATATCTGGTAGGGCAGTGAGGACCAGAGTGGATGCTTGACCATCTACCAGGCTCTGAGAAGGGAAAGCCCTTCTCACAAGCGCGTGTTATATGCAAATCACTCCATAAATATTTGTCTAAGGAGTGGCTACAATTTATTAAGTGTGATAGCAAGCTAGCTTTCCATAAAATCTGTCTGCCCATGATCATTTGTCAAAGATCTTCTGTATGCTTTTTAAAAGGATTTTCTCTACTTCCTACATTTGGTAACAGTAAGTTTCTAAAGAGATTATCACTGCATGCTGGTGCTTTCCTGTGTGTGCTCTGTAACACCTCGGGCTTGCTCTGACCATGGGTAGCAGAAATCCTTGAGGTGTCCTCTCAGCTCAGTGAGAAACCTCAGCTGACCTCTGTGTGCCCCATGTTTGTCCTGTCAGTTAATGTTATCATGCTGAGTTGAACCGTGTTCCTTTCTTCCTGAAG
Seq C2 exon
AATATGGACTGTGTTCAATCACATTACAAAACAAGATCTATTTTGTGGGTGGACAGACCACGATCACAGACTGCTACGACCCAGAGCAGGACGAGTGGAAGCAGATGGCTCACATGTTGGAACGGAGAATGGAGTGCGGCGCGGTGGTGATGAACGGGTGCATCTATGTGACAGGAGGATATTCCTATTCCAAGGGAACGTACCTGCAGAGTATTGAGAAATACAACCCTGAACTAAACACGTGGGAAGCAGTAGGCAACCTACCCAGTGCCATGCGTTCACATGGCTGTGTCTGTGTGTATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020737:ENSGALT00000015791:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0134420=Kelch_1=WD(100=90.4)
A:
NA
C2:
PF0134420=Kelch_1=WD(100=38.2),PF0134420=Kelch_1=WD(100=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGGGGAAGCTGCACCTA
R:
TAGGTTGCCTACTGCTTCCCA
Band lengths:
352-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]