RnoINT0080042 @ rn6
Intron Retention
Gene
ENSRNOG00000007981 | Klhl23
Description
kelch-like family member 23 [Source:RGD Symbol;Acc:1307166]
Coordinates
chr3:56063460-56067788:+
Coord C1 exon
chr3:56063460-56063612
Coord A exon
chr3:56063613-56067494
Coord C2 exon
chr3:56067495-56067788
Length
3882 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTCCTTTTCCTTCCATAAAGAAT
3' ss Score
6.12
Exon sequences
Seq C1 exon
GTGTGGGAAATGCGACCGCCTGTGTCCTGCATGAAGTCATCTATGTCATTGGCGGCCACTGTGGCTACAGAGGAAGCTGCACGTATGACAAGGTGCAGAGTTACAATTCAGACATCAACGAATGGAGCCTTATTACTGCGAGTCCACACCCAG
Seq A exon
GTAACAAGAATCCTATTTCGAGTATGTAACTGTAGTCCTTAGGAGAGTTGGGACAGCACATAGAGATTAAAGTTGGGCGAGGTGCCTTCTCTTTTAGAAGCATGCTCGCTCTGGGTTCCAAGGACTATTAAACACCTGTTCCTAGATATGCAGAGCCCTGCTACCTTAACAGTCATAAAAAAAGGTGTTGTCTATCAAAGAAATGCCCTGCTTCTATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACTAGAAAATAACGTCAAGTGTATTCCTCAGTTGCCTCAACGCCTTATTTTTTGAGGCAGGTCTTTCTGAACCTGGAGCTTACCTATTTGGCTAGACTGGTTGTCTGGCGAGCTCGTGAGGTCCTTGCTGGGAAAACAGGCATGCATTGTCGAGCCCAGCATCGTATGTGAGTGCTGGAGATCTAAACTCAGGCCCTCAGGCTTGTGTGGCAATCGCTTTCTTAGCTGAGCCATCTCTTTGACCCCCTTTGCTCTCTTTCACCCTCAGCCTATTACACAGGGTTGGGAGTGACAAGAGAATGTGCTTAGCGCGGGTTAGGCCCTAGGGTCAGGCCCTAGGGTCAGCCCCACTGCGATAGAGTGAGTAGTCCCGGATTTTACAGTTACCATGTGTCTGAGAGTTTGCACTTGGATGAATTCATACCACGCTACCCTATTATTTCAAATCAGTTTTTGTAGAGCGTCAGGATTTTAGTGGGTCACTGGAGAGGGAAATTAAGATCTTCAGGCTTGAGATATTTGTGACTAGCAGCAATAGTGAACACCTTTGAGGTGTAGGCGAGGGATCAACTAAGCACTTTACATGCAACATCATCCTTAATTCTCTCTGAAATCCTGTGTACAGGTATTGTTATCATTGATTTTCATACTTGGAAAAGCAAGGTCCGTAACTTAAAAAGGATAAGTAACTTTTCCAACAACACAGTTTGAAAGTGACGACCCAGGATCCTCAGTCTGTCCGTCTTGATTCCGTAGTCTGGGATGTGACCACTAGGCAGCCTGCTTCTGCTTCCTGGAGCAGCCTTTCTTGCTCTCAGTCCACACAGCTGCTTCCGCCTCATACGTCTGTCTCATCTCGACTGTGTCTGGTGCCACATCTCGGTTGCCAACACCTTCACACTAGGGGACACACAGCCACAGGCCGTTCGGGCTCTGAAAACATAGACTGTGTAAACCCCGGTCTTAGTAGTCCAGTCCTATCATGTAGTCTAGACAGTACTCCTGTCACTTTCTGTCGTGATCGACAGTTATTAGGAGTAATAAAAGTATCTCATGCTGAACAATAGTGTTTACTCAGTATTGGCCAGGCAGAGAACTCCAATAAGTTTACGTGTCTTAATCTGTTTATTTTCGTCTCTTTACAATAAATACTGCAACGAAATACCCGAGGCAACTAACGTGGTCAGAAAAGGTTTATAGTCCACAGTGTGGAGGCTCTTTTCCAAGACTGGTCTGCTCTCCGATGAGAGCAGGAAATGATGATGTCAGAAGCATGTGTGAAAGCCGTGGCCACCTCAACAACCACTGAGGAAGAGGAGAGAGGGACTGGCCAGACTCATACAGTACTTTTCAGGGGTCTTCAGTAATGCCCCACCTTTTTATAATCCATAGCACCTCCTAATATCAATACCGAGAGGACTAAGTTGTTTTATATATATATATACATACATATATATATATCTCCATATTTAAACCATGACACTATGTATGTATGTATTTATGTTGTGTGTCTGTGTATGGTGTGCATGCTTGTCTGTGAGGATATGTGTGCACGCTGTGCACAGGTACACAGAACATGCCTATGACAGGCACACAGAACATGCCTGTGACGGCCTGAGATGGATATCATCTCCTTGGATGCTCTCCACCTTATATATTGAGGTAGGACCTCCCAATGAACCTGGAGCTCGCCGTTCACGTTAGTCTGGCTTATCCTGAGGATCCTCTTCTCTCTGCCCCATGAAGTGGGATTATGCCCACCCTGCATTTACATGGATTCTAGAGTTCTGAACTCTGGGCCTCGTGCATGGCAAGCATTTTACCTGCTGAGCTGTCTCCCCAGCTATGTTGCTGCATGTAAACCTTAAAGTAATCCTGTGAGCTAGGGAGGTGGTACTGTTAACTGGTTTATCAGGAGGTTGAAGGGGTGACATTAAATACATTGTTCAAGGCCAGTCATCTAATGTTTGTTAGAAGTGGGGTTTAACAGGTAGCCCCGGGCCTTCACTGTTTTCCCTTCTGAACACCTGCGTCCCATTTTACTCTGCTTATTTGGTGCTCACATTTATCTTTCCAACAAAATCCAACACATGAACAATCAGATTTTCAATTTAGATTAAAAAGAATAAACAATAGTAAGGAACAGTTAGAAAACAGTTATTTACATTAATATTTTAATATGTATTGTACAAGAGGATCCCTTTAAAAATAAGTACTCTGGGCCTAGAGCGATGGCTCAGCGGTTAAGAGCACTTGCTGCTCTTGCAGAGGACAGAGGTTTAGTTCCCATTACTTACATGGCGGCTCATTAGCCTAGCTCTGGCCTTTGTGGATACCAGGCATGCACAAGATCCACCTATGTACACGTAGGAAGGCACTTACCTACACACAGACATAAAAACGAATTAAAGATAAAAAGTTTTCCACCATATCTGCAAGTTGTATATGGTTTATTGGCTACGTGAAAAAGCGTCTAAAAGGCAATGTTATTTAAGCCCAGTGTTAGAAGGCACAAACATTTGAAAATCAGCCCCTCAAAAAGTATACACACAGTTGTAGTTGTGAAGTTTCAATTTATATTAAACTTTTCCTGAGGAGCTAATTTTTAACAACACCAATTAGCACCTTACAAGTACGTTCTGTTTGGCTGTCAGAGTGCTTAATCTATTTTTGAATTGGCTGGTTACCAAAATTTAAAATTCAAAAGATTTTGAACAAAAATCATGGTTTGGAGGCCTTTAAGGTCAGGTGGTAAGGACGGGCAGCCAGGTCCATCCTGGAGTGGTAATGACAGCCAGGGAGTAGCTGTCCTGTTAGATGAGGGCTGTGTTCTCCACCTCAATGCTTCCAAATCTGGTCACACTCCAGATCAAAGGACTTGGCGTGCTGCTTTTCTTACCCCTGGCTTGCTTAATACCATGGTGCCTAGAGGAGCCAACAGAAGGGAAGAACCAAACCAAAAGCACAAGCACAATGTAGGTGAGGAGGCCCCTCTTGAGGGGACTGCCAGCTACAGGACCCAAAAGCCCAAGCAGGCTTCTGCTGCAGGACACCTTTCAAGATGGCTGGGTATGATAGTCATAGACCTCAGTAATGCTTGTGTGTGTTTCCCAGACCAGATGGGCAGTGTGAGGGATGCTAGCCAGGCCATCCTCTGAGGCAAGTGTAGTGGCTGAGACATCAGGTAGTCTCTATCCTTGGTCATAAGGTTGCTGAGATCTTGAGAAACCTACACCGGTTCTGTAGTTTAATGTCCTGTCAGGAGGAGTCTACTGCTATTGTTATGAAAGTTGATATGGGTCAAGATTGAAGATAGACGTCAATGAAAAACGAAAAAGCTCCACATGGTGGGCAGTTCCCAGAGAGATGGTGGTGTGAGGGGTGGGTTTCTTCTTGCCACTGTGTGTAGGCGGTGATGATAGGATCCCCTGAGGGCTAATGGCCATGCAGCAGGAACAGGCCATCTGAGTCAGATGGCAGGGACAGCAGAGTATGACAGAATCAAAACGTCACCAGGTGTCTGTTTTTGTGTTCTAAACCGCAGAGCTATTGTACGATAGCCCTCTTGCTACCAGAATTAAGTCTTCGTTCTTTCCTTTTCCTTCCATAAAG
Seq C2 exon
AATATGGACTGTGCTCAGTTCCGTTTGAAAACAAGCTCTACTTAGTCGGGGGACAGACTACGATCACAGAGTGCTATGACCCAGAGCAGAACGAGTGGAGAGAGACGGCGCCCATGATGGAGAGGAGGATGGAGTGCGGGGCCGTCATCATGAATGGATGCATCTATGTAACCGGGGGCTACTCCTACTCAAAGGGCACGTATCTTCAGAGTATTGAGAAATACGACCCAGATCTTAATAAGTGGGAAATAGTGGGCAACCTCCCAAGTGCCATGCGCTCTCATGGCTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007981:ENSRNOT00000010508:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0134420=Kelch_1=WD(100=84.6)
A:
NA
C2:
PF0134420=Kelch_1=WD(100=39.4),PF0134420=Kelch_1=WD(100=48.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]