GgaINT0048324 @ galGal3
Intron Retention
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20062936-20063651:+
Coord C1 exon
chr7:20062936-20063109
Coord A exon
chr7:20063110-20063541
Coord C2 exon
chr7:20063542-20063651
Length
432 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TATTTCCTCTTCTTCCTCAGGCA
3' ss Score
9.8
Exon sequences
Seq C1 exon
AAAATGCAGATGAAGATGAAATTGGAGAAGGAGAGAGAGGAAAAAGCAGAAAGTAAAAAAGAACTTCAAGCATTGCTGGAAAAGAACCAGATCTATCTGGAATCAGAAAAAGCCAAGAAACAAAGACAACGTGATGCAAGCATAGAAGTACAGAAAATTCAGATCCAGCAAATG
Seq A exon
GTAAATGGCAGTGCCATACCCTTCCAGTGCCTTCAAAAAGGAGCATAAACCTAACTGACAGTGCTAGTCAGTGTGGGAGTCATCCATACAAACCTATTCCTGCCAAGGAGTGTTGCATGAGTGAAGGCTGGTTTGCAGTGACACATCAGTTCCCGTCCTGTGTTGTCATGTATGGCTGCTGTCCCCTTGTTCCTTGGGGATCTGCCCAGAAGATACAGCAGTGAATGCTGATGTTCATTCAGCTATTCAGTGTACACTTTCCTGTGGTGGGGTGAGCTGGGAATGAACTGGGGAGGAATGATATCTGACAAGCATGGTAACGTCACCTCCAATCTCCTGTAAGCTTACCCTCTCTAAATTTTAACAGACAGTTATGTTGTGAAAGAAATCCTAATCTTTGTTATTCCCTTTTTATTTCCTCTTCTTCCTCAG
Seq C2 exon
GCAGAAAAGAAGGCAAAAGAACAGCAGGAGAAGCAAGCAGACTTGGACTACAATGCTCAGAAAGAGCTTATTGCGCTCCATAAAGAACATGAATTCCAGAAGTATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824:ENSGALT00000015986:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=0.811
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATGAAGATGAAATTGGAGA
R:
TGCATACTTCTGGAATTCATGTTCT
Band lengths:
278-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]