MmuINT0004447 @ mm10
Intron Retention
Gene
ENSMUSG00000070883 | Ccdc173
Description
coiled-coil domain containing 173 [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69758033-69761886:-
Coord C1 exon
chr2:69761722-69761886
Coord A exon
chr2:69758466-69761721
Coord C2 exon
chr2:69758033-69758465
Length
3256 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TTTATTTTTCTTCCAAATAGGCC
3' ss Score
10.65
Exon sequences
Seq C1 exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTCACATTCAGCAAATA
Seq A exon
GTAAGTATTCTCACTTCCCCATCATTTTTACAGATAAATAGGCAACAGACTTCCTTTTGGATTCCTTTCTCTTAAGTGGTTTCCGTCATCAGACAGGAATAAATAAATGATCATTGTGGCGTCACAATAAAACCATAGTAAAAGTGTGAAATTAGCTTAAGGCTCTCTGTTCTGTGATTCTCTGCTGTGATGGCTTAAGGATTGAGCTTATGGGGCATCAGGAAAGAAGAAACCTGAGACATACATACAGAATAGCAGGGATCCAGTGGGCCATGTATTCTGATGAAGACACACCAGCAACCGCCTGGAAACTCAGCTCCTCTCTTTCACCCATCTGAAGTGAGGAGTAGGTTTATTATATACAGCTCAAACAGGAGCAGTATTACATACAGCCGAATAAGGAATCAGGCTTGGTTCATCTCTGTAGGGAGTCTGTAGGGAAGCAGTCTGAGGCTGTAAGTATCCAGGAGGAAGAAACTGCCATGGACATTTTTCTGGATTTGCTACTCCATGAGGCATTGTGTCGGTGCTCATGGCAACAGTATGCATTCACTCAGGACTGCATCTGCTCCCCACGGTTCTCATTCTAGGGTTTTGTTCACAACTTTTTATCTTTCTTTAGAGCCTGTTATGCTTAGTAAATACTAAGGACGATGTAGACACATGGCATGGGCTTTGGTGCACGTCCTTTGATGCAGGTTATTCATAGGTTCTGAACATGAATCTTTTGTGTCACTTTTCTCCCCCTTTGCTTTTTTATGGCACATCCTAATGCAGTCTCCCTCTAGCTAGATTTGCAAACATTATTTTCCCAACTTTAGAACAGTAGCCCAACAGCCATGTTGACTGGGGTCTTGTGGGATTCAATTGTGAGACAAAGGAATATCCGAGATTTAAATGATGGATGGAGAATCTGGTGGCCGGTCACTTCTGTGCAGAATCTTTTCCAAATATGCACTTGTCTCCCATTCCTATCAGCAGCATGAATGAGCACAAGTCACTCCACATTCTTCCCAAGCCTTGGTATTGGCATAGTGGATGCCAACTGTTCTGAGGAGTGGCCTAACCTGCCTTGAGAGAACTACTTTGCATATATTTGTTGGGCATTTATTGACTTCTTTTGCAAAGTATTTATTTAAACTTGTTGACAATTATTTTGATTTGTTCTTTTTTTCCACTTATTTATTTTTATTTTATGTGCATTGGTGTTTTGCTTGAATACATGTCTGTGTGAGGGTGTCTGATCCCCTGACACTGGAGTTGCAGACAGGTGTGTGCTGGGAATTTAACCTGGGTCCTCTGGAAGAGCAGAGTGCTCTTAAACCATTGAACTGTATCTCTGGCTCTCTTGGTTTATTTTCTTTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGTGCGTGCTTAGGCCCAAAGTTGATGTTGGCTATCTCTCTCAATTGTTCTCCCATTTTTGGAGGTAGGTTCTCTATCTGAACCTGCTGTTTACAGATTCCAACTAGCTTAGCTGAGATAGGGATCCCATCTCAGCTTCCTGAGTGTGGAGATTACAGGGAGCCTCCATACCTGCCCTGCTTTTCTTTGTGTTTTGGTGATCCAAACTCTGGTCATTAGGCTTGCAGGACAAGTATTTTATCCATTGAACCACTACCTCCCAGCACTTGAACAAGTTTAAACATGGAAACAGTATATTCCTGTGATTAACCCTATTTGATTATGATGCATTTTTTAAAATGTGTGTGTGTATTTGTGCTGGATTCAGTTACTTATATGTGTGAGGGCCTGTACACACACGCACACGCACACGCACGCACGCGCACACACACACACACACACATGCACTGGTACCTATGGAGACCAGAATAGGGAGTTGAAAACCCTGTAACTGGAGTTAGACAGTTGTGAACTACCCTGTGGGTGCTTGTAACTTAACCTTAATCCACTGGAAGAGCCAATGCACTTAACTGCTGAGTCACATCTTGAGCCTCTCCAATGTATTTATAATTCAGTGTCTATTATGTGACAAGTACTATTTTTTATATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTCTTCCTCTTCTCCTCCTCCCTCTCCTTCTCCTCCTTTTTCTCCTCCTCCTCCTCCCTCCCCCTCCCTCTCCTCCTCCTTTCCTTCTCCTCCTCCTCCTTCATCTTCTCCTCTTCCTCCTTCCTTCCTTCCTTCCTTCTTTCTTCTGATATGTAAACAAGGACATCTCATTTTAGCTTATTACCCCTTGGTGAGATTGTTTAAATTCTTCTGTCTTCTGTTCTTATTGGATACTGACTCTGGATATTTTATTGCTAATTCAGCAAAGAGAACATAAGCCTTACTTTTAGAACTCAGTGATAAAAAGTTTGGTATTTCAAACTGATATACTTGTGCCTTTCCCTCAAATTTCAATTGGTAGAAATGATCAGATCTTATGTTAAAGTTTTAGATTGTTAAAATATTTTCATAGATAGTAAATATATCCATATACAGGAAAAACAACTTATATTTAGAAATTCAGCACATCTTAAAATGTTACAAATATAAAATTGAAATTTGTTAAAATTTCAGAGAAACCATTAAAAACATATCTATCTTCCAATATAAATTAATGTAACATTATAAGACAAAGTCTTTGTAAAGTATTTGAGAGATTGCCTAATACTTATTTCCTCAGTTTTGAATACATTTTCATAGATTAATGTCACTCATTGTTTAATTTCACATTCCTGGGAAATAGAATGTAACTGGTTGCATATAACTTAGGTATTCCCTGTTGCTTTAGTTTTATGTTGATGAACAGGAACAATAATTATATGCCTTTTTAACTTACTGAAGATCACATATGTAAATGATTGAAAGAGAACTGTATTTTTTATTTTTAACCTAAATTTATGCTTTTAATCTTGTTACGTTGTTTTAACTGTGTATCACATAAAGCCTTGAGTTTAAATACTTAATCTACACTTTGAGTATATTCTTAAAAGCATAAAAGAATTGATGAGTTAAAGCATATTTGTAAAATACTGAGTTTATAAAATTTCAACTGCATCTTAAAACTACATAGATATTTGGAAAGCATGTTTTTGACCAATATTAAAATTTATTTTTCTTCCAAATAG
Seq C2 exon
GCCATAAATAAATATAATGCAAAACAAATGAAGGAAGAAGAATTAGATTATTGGAGACTTACTGACGCCCTTACAGTTGAGAAGGAGAAAGAATTTGAGAAGTATGCTAGAGAAGTAATTAACTTTGAATCTGAATCAACAAAGAAATACGCCTACCCTATGGTAAAAGCTGTGCAGGAAGGAGTGGGAGGTGGACGTGGACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGGTCCAGCTCCCTTGTTTTAAAAGTCAAGGATCAAAGTATAATGATTTTCAGAAGTCGAAGAGAAGGCTAGGTTTTACTTGGTAAAAAAGGTCATATTTTGATTAATAAAATTTACTGTAATGAGCTACAAATATAATGGAATTTCTGATAATAAAGAGACTACTTATGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883:ENSMUST00000094942:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(16.1=100)
A:
NA
C2:
PF138681=Trichoplein=PD(12.2=35.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types