MmuINT0004447 @ mm9
Intron Retention
Gene
ENSMUSG00000070883 | 4930578N16Rik
Description
RIKEN cDNA 4930578N16 gene [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69596114-69599943:-
Coord C1 exon
chr2:69599779-69599943
Coord A exon
chr2:69596523-69599778
Coord C2 exon
chr2:69596114-69596522
Length
3256 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TTTATTTTTCTTCCAAATAGGCC
3' ss Score
10.65
Exon sequences
Seq C1 exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGGAAAATAGAGGCTAAGGAACAATTGCAGGCTGTCTTGAAGGCAGATAAGATCTTCCAGGAGCTTGAAAAGGAGAAAAGCCTCAAAGTGACCAGAGAGAAACTGGAAATTCAGGATGCTCACATTCAGCAAATA
Seq A exon
GTAAGTATTCTCACTTCCCCATCATTTTTACAGATAAATAGGCAACAGACTTCCTTTTGGATTCCTTTCTCTTAAGTGGTTTCCGTCATCAGACAGGAATAAATAAATGATCATTGTGGCGTCACAATAAAACCATAGTAAAAGTGTGAAATTAGCTTAAGGCTCTCTGTTCTGTGATTCTCTGCTGTGATGGCTTAAGGATTGAGCTTATGGGGCATCAGGAAAGAAGAAACCTGAGACATACATACAGAATAGCAGGGATCCAGTGGGCCATGTATTCTGATGAAGACACACCAGCAACCGCCTGGAAACTCAGCTCCTCTCTTTCACCCATCTGAAGTGAGGAGTAGGTTTATTATATACAGCTCAAACAGGAGCAGTATTACATACAGCCGAATAAGGAATCAGGCTTGGTTCATCTCTGTAGGGAGTCTGTAGGGAAGCAGTCTGAGGCTGTAAGTATCCAGGAGGAAGAAACTGCCATGGACATTTTTCTGGATTTGCTACTCCATGAGGCATTGTGTCGGTGCTCATGGCAACAGTATGCATTCACTCAGGACTGCATCTGCTCCCCACGGTTCTCATTCTAGGGTTTTGTTCACAACTTTTTATCTTTCTTTAGAGCCTGTTATGCTTAGTAAATACTAAGGACGATGTAGACACATGGCATGGGCTTTGGTGCACGTCCTTTGATGCAGGTTATTCATAGGTTCTGAACATGAATCTTTTGTGTCACTTTTCTCCCCCTTTGCTTTTTTATGGCACATCCTAATGCAGTCTCCCTCTAGCTAGATTTGCAAACATTATTTTCCCAACTTTAGAACAGTAGCCCAACAGCCATGTTGACTGGGGTCTTGTGGGATTCAATTGTGAGACAAAGGAATATCCGAGATTTAAATGATGGATGGAGAATCTGGTGGCCGGTCACTTCTGTGCAGAATCTTTTCCAAATATGCACTTGTCTCCCATTCCTATCAGCAGCATGAATGAGCACAAGTCACTCCACATTCTTCCCAAGCCTTGGTATTGGCATAGTGGATGCCAACTGTTCTGAGGAGTGGCCTAACCTGCCTTGAGAGAACTACTTTGCATATATTTGTTGGGCATTTATTGACTTCTTTTGCAAAGTATTTATTTAAACTTGTTGACAATTATTTTGATTTGTTCTTTTTTTCCACTTATTTATTTTTATTTTATGTGCATTGGTGTTTTGCTTGAATACATGTCTGTGTGAGGGTGTCTGATCCCCTGACACTGGAGTTGCAGACAGGTGTGTGCTGGGAATTTAACCTGGGTCCTCTGGAAGAGCAGAGTGCTCTTAAACCATTGAACTGTATCTCTGGCTCTCTTGGTTTATTTTCTTTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGTGCGTGCTTAGGCCCAAAGTTGATGTTGGCTATCTCTCTCAATTGTTCTCCCATTTTTGGAGGTAGGTTCTCTATCTGAACCTGCTGTTTACAGATTCCAACTAGCTTAGCTGAGATAGGGATCCCATCTCAGCTTCCTGAGTGTGGAGATTACAGGGAGCCTCCATACCTGCCCTGCTTTTCTTTGTGTTTTGGTGATCCAAACTCTGGTCATTAGGCTTGCAGGACAAGTATTTTATCCATTGAACCACTACCTCCCAGCACTTGAACAAGTTTAAACATGGAAACAGTATATTCCTGTGATTAACCCTATTTGATTATGATGCATTTTTTAAAATGTGTGTGTGTATTTGTGCTGGATTCAGTTACTTATATGTGTGAGGGCCTGTACACACACGCACACGCACACGCACGCACGCGCACACACACACACACACACATGCACTGGTACCTATGGAGACCAGAATAGGGAGTTGAAAACCCTGTAACTGGAGTTAGACAGTTGTGAACTACCCTGTGGGTGCTTGTAACTTAACCTTAATCCACTGGAAGAGCCAATGCACTTAACTGCTGAGTCACATCTTGAGCCTCTCCAATGTATTTATAATTCAGTGTCTATTATGTGACAAGTACTATTTTTTATATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTCTTCCTCTTCTCCTCCTCCCTCTCCTTCTCCTCCTTTTTCTCCTCCTCCTCCTCCCTCCCCCTCCCTCTCCTCCTCCTTTCCTTCTCCTCCTCCTCCTTCATCTTCTCCTCTTCCTCCTTCCTTCCTTCCTTCCTTCTTTCTTCTGATATGTAAACAAGGACATCTCATTTTAGCTTATTACCCCTTGGTGAGATTGTTTAAATTCTTCTGTCTTCTGTTCTTATTGGATACTGACTCTGGATATTTTATTGCTAATTCAGCAAAGAGAACATAAGCCTTACTTTTAGAACTCAGTGATAAAAAGTTTGGTATTTCAAACTGATATACTTGTGCCTTTCCCTCAAATTTCAATTGGTAGAAATGATCAGATCTTATGTTAAAGTTTTAGATTGTTAAAATATTTTCATAGATAGTAAATATATCCATATACAGGAAAAACAACTTATATTTAGAAATTCAGCACATCTTAAAATGTTACAAATATAAAATTGAAATTTGTTAAAATTTCAGAGAAACCATTAAAAACATATCTATCTTCCAATATAAATTAATGTAACATTATAAGACAAAGTCTTTGTAAAGTATTTGAGAGATTGCCTAATACTTATTTCCTCAGTTTTGAATACATTTTCATAGATTAATGTCACTCATTGTTTAATTTCACATTCCTGGGAAATAGAATGTAACTGGTTGCATATAACTTAGGTATTCCCTGTTGCTTTAGTTTTATGTTGATGAACAGGAACAATAATTATATGCCTTTTTAACTTACTGAAGATCACATATGTAAATGATTGAAAGAGAACTGTATTTTTTATTTTTAACCTAAATTTATGCTTTTAATCTTGTTACGTTGTTTTAACTGTGTATCACATAAAGCCTTGAGTTTAAATACTTAATCTACACTTTGAGTATATTCTTAAAAGCATAAAAGAATTGATGAGTTAAAGCATATTTGTAAAATACTGAGTTTATAAAATTTCAACTGCATCTTAAAACTACATAGATATTTGGAAAGCATGTTTTTGACCAATATTAAAATTTATTTTTCTTCCAAATAG
Seq C2 exon
GCCATAAATAAATATAATGCAAAACAAATGAAGGAAGAAGAATTAGATTATTGGAGACTTACTGACGCCCTTACAGTTGAGAAGGAGAAAGAATTTGAGAAGTATGCTAGAGAAGTAATTAACTTTGAATCTGAATCAACAAAGAAATACGCCTACCCTATGGTAAAAGCTGTGCAGGAAGGAGTGGGAGGTGGACGTGGACCACCCTTTGTAGGCAGAGGTGGGATAAGGCCAAGCTATCAGGCAACTGATGCCACTGGGGTCCAGCTCCCTTGTTTTAAAAGTCAAGGATCAAAGTATAATGATTTTCAGAAGTCGAAGAGAAGGCTAGGTTTTACTTGGTAAAAAAGGTCATATTTTGATTAATAAAATTTACTGTAATGAGCTACAAATATAATGGAATTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883-4930578N16Rik:NM_001077684:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(16.1=100)
A:
NA
C2:
PF138681=Trichoplein=PD(12.2=35.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: