HsaINT0023601 @ hg38
Intron Retention
Gene
ENSG00000154479 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:169645425-169649346:-
Coord C1 exon
chr2:169649182-169649346
Coord A exon
chr2:169646183-169649181
Coord C2 exon
chr2:169645425-169646182
Length
2999 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TTCCTTTCTTTCCCAAATAGGCC
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATGAAAAATAAAGAGGAAGAAGAAAGACAAAGAAAAATAGAGGCTAAAGAACAATTGCTGGCTGTCATGAAAGCAGATCAGATTTTCTGGGAACATGAAAAGGAGAAAAAATGCAAAGCTGATAAAGAACATCAAGAGGTTCAAGATGCCCATATTCAGCAAATG
Seq A exon
GTAATTACTCCTGAATGTTTATAATTATGTTAGTAATAAGTATATAATACAGAATTCATGCTAGTTTTCTACTCCCAAGCAGTTTCATCAGGTAAGAAAAAAATGGTCATTATGGTTATGACACAATAAAATGTATTAAAAATGTGAGGTTTGTTTCTATCTCCAGTGAAGTTCCCATGTGAGTTTTATCTTTTAAATGAATGTTTATCCTTCTTTAGTGTCTATTATACTTCAGTAAATATTAAAGAAAATACAAATGCATGTGGAGGCCATAATGTTCATCTTGTTTTACTTTTTTCCCATATCTCAGAGACTATGTTGATTGCGATCTCATAGGTTTCAGATTTGAGGAATGGAGATATCAGATTTTAAAAGATGTGTAGAGGACCTAGCATCCAATCATTTGTAACTAAAACCTGTTTTTGAAATGGTTGTACCATTTTCCATTCCTACCAGCAATGTATGCAAGCACAACTTACTCCACATACTCATCAACACTTGATAGTCATCCCTTAATTTTAACTATTCTAGTATAGTGATATCTTATGGCTTTATTTTACATTTCTCTAATGACCAAAGATAATGGACATTTTTTTCACATCCTTGCTAGCCATCTGCATACCTTCTTTTGTGAAGTGTCTATTTAAGAGTGTTGCCAATTTTTAATTGGGTTGTTTTCTTAGTGCTGAGTTTTTTAAAATTGATTTTTATTGTGGTAAAATATACATAACATAAAAAGTACCATTTTAAGCATGGTTAAGTGTACAGTTCAGAGGCATTGAGTACATTCACATTGATCATGGCCACTATACATCTCCAGGGTTTTTCATCATCCTGTACTAAAACTCTGTACATGTTAAACAGTAACTCCCTATCCCCTCTTTTCTCCAGTCTGAGTAACCTCTGTTTTACTATCTCAATGGATTTGATTATTCTAGGTACCTCATAAATGGAATCAGACAATATTTGTCCTTTTCTGTTTGGTTTTCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTTTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATACCCACTCTCGGCTCAGTGCAACCTCTGCCTCCAGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCACGCTGGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGTCCAGGCTGGTCTCGAACTCCTGACCTGAAGTGCCCACCTTGGCTTCGGCCTCCCAAAGTGCTACGACTACGCATGAGCCACTGTGCCCGGCCTCCATTTTTGAATTGGATTTTTTGTTGTTGGGTTTTAGAAGTTTTAAAAATACTCTGTGTATTAAATCTCTTATCAGATACATGATTTGGAAATGTCTTCTTCCATCCCATGAGTTACCTTTTTACTCCATTGATAGTATCTTTGATGTATAAAAGTTTTAAATTTTTGGCCAGGTGCCAAAATAGTTTGTTGTTTCAATCACGATCAAATAAGATCAGTATTTGGAATCCTTCTGATTTACTTGTTGAAGTCTTTAAGAAGTTTTCTTGATCAAATACTTGGTTCCTCTTAGGTACAATTTTTAAAGAAAAAAACAGAATACTTGATTTTTTTTGCCTTATTTTCCAGTTTTCAGACAGTTAATTAGCTATTATCTTCCAAATGTACTTCGAAGGTACTTTACCTTCATCTGTTAGCGTTTTTTAGGATTTTAAACTTAATTTTTTGGAACTTTTTCTTTATATATTTATGCTTAATGCATATCAAATGTGAGGTACCAATCATATGTTCCATTATAGTAATTCTTTCCTTCCATTGTCACTTCCTTTCTGTGCTTCAAGTGGTTCTTTCTGTTCCCTCAATATTTTTCTACATTTACTAAACATATCCAAATTGCTGCTTATTAAGTTCCCAAATATTAGCATTTTACCTTCGATTAGAGATCGATTTTAGCTTTTTTTTGACTTTTTCTCCAATCTTATTGTCATTTTCTACTTTTTAAAACTCTGGCATTTTATCCCCAATTTCACAAATAGTATGTAAACTGAATTTTGAATTGTAGCACTCAATAATGAAAAATTTGATATTTCACACTAATATGGTTGCTCTATTCCATCAAAAATTTAAATTTATGATAGATATCAGGTTTGGGTTACTATTTTATGCCAACATTTTGGATTTTGAGAAATATTTTTATGAATATTAAATATATTCCTAAGTAGTCAAAGTAACTGTTATTTTAAAAAATAAACTCAACATTTCTTAAAATGCCACAGAGAATACAAAATGAGAAGTTGCCAACCAGAGCATCACAGAAAAGCCATAAAAAGAATCTCATCCAATGTAAATTAATATAAAGAATTAAACGACAAAATTTGTATAAAATATTGGTAAATTGGCTTTTGGCAAATTGCCTACTTATTCCACTCAGTGCCTTCTCAACCTACATTGATAAATGTCACTCACTGTTCCAATTTTAAATTTTCGGGAAATAGATAATGTAAATGGTTTTAGTCCAGATATTCACTGCTGATTTAATCTTATGTGGCTGGGGACATAGTATATTGGGCTGACCCAGCACAGTAGAGTTGAGTGAATTCCTCCAGAATAGTGGATGGTTAGAGACAATGGTGGGTGTGCATTCTAAACCACCAAAGTTCACATCTTGTGATTGAAACAGGACTCTAAACTCAGTTACCTGAGTTTTATCTAAATTTCATAATTTTCGCTATTTCACTGTGCTATTTGCAAATGTATCACATAAGGCTATTAATAAAGGTTTCATTGCACCACCACTTTGAGCATGATAGGAAAGATTCTGAAATAAATGATAGTATATAGTTGTTAAATCAGAACTTGTAAAGTATCAATGAGTTTAGAAAATTATACCTACATTTTCAAATGCTATGTATATTTAGAAAGTTCATGTTCTTAACCAATATTAAGTTAAATTTCCTTTCTTTCCCAAATAG
Seq C2 exon
GCCAAAAATAAGTTTAATGCAAAGCAAGCAAAACAAGCAGAATTAGATTATTGCAGACTTACTGAAGCTCTTGTGGCTGAAAAGGAGAAAGAATTTCAGGACTATGCCAGAGAGGTAATTGAACTTGAATCGGAAACAACAAATAAATATATTTACCCTCTTGTAAAAGCTGTACAGGAAGGACCTGGAGGTGGCCGTGGACCAGTGTTTGTGGACAGAGGTGGATTAAGACCCAGCTATCAGGCAAATGATGTTACTGGAGTCCAGCTCCCTTTTTATAACTCTCAGGGACCAAAATATAATTTTCAAAAGTCAAAGAGAAGGCTAGGTTTTACATGGTAGAAAAAAATTATTTTTAACATTGAGAAGACTAAGTTGTAGCATATATGAGCTTCAAATATAAATGGATTTCAGTTAATAAAGCTGTTCTTCATCTAAGTACAATTATGTCTGATTTAATTGATTGTTCTCAGTATTTCTTTTGGGTATATATAAAACCCCAATTTTGAGATTCCTTTTTTTAACTGTGGTAAAATACACAAGTTTACTTTTTAAATGTACATTCAGTGGTATTAAGTACATTCAAAATATTGTGTAGCCATGACCATTGTGTAGTTCCAGAATTTTTCAGTGCTCTTACTAGAAACCCCATACCCATTCATTAAGCAGTCACTCCCCATTCCCCTTCCCCACAGCTCCTGGTAACTTTATCTGCTTTGCCTATACTGGGTATTTTGAATAAACAGAATCATACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479:ENST00000447353:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(16.1=100)
A:
NA
C2:
PF138681=Trichoplein=PD(12.5=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development