GgaINT0048331 @ galGal3
Intron Retention
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20069471-20070322:+
Coord C1 exon
chr7:20069471-20069644
Coord A exon
chr7:20069645-20070215
Coord C2 exon
chr7:20070216-20070322
Length
571 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TGTTATTCTCTGTTTCTCAGGCA
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAAATGCAGGCAAAGATGAAATTGCAGAAGGAGAGAGAGGAAAAAGCAGAGGGTGAGAAGGACCGCAGTCAGTGGATGACAGATGATCGTATCTACCTGGAAATGGAAAAAGCTAAGAAAGACAAACAGCATGATGCAAACGTAGAATTACAGAAGTTTCGAATCCAGCAAATG
Seq A exon
GTAAATAGAAGCGTGGTACCCTTTCAGAAAGAAGCATGCATCTATACTAGCAACACTAGATACTGTCTGTAGAGCAGGGACAGGAGGCATGCCGCGTGTGATGTGTTGTTTGTGATCTGTGTGCACTGCAGATGTCAGTACCGGGGAGCCAGCCACATCTCAGAGGAGTGGAACATAAGTTTCTTCTGGGCTTTCTCAGCCTGTATTGGTCAGGGAGGATTACTAGGAATGGCTAATGATAGGAAAGAGATCAGCGCTGCAAATATGGCCTCAAGAGACACCACTTAGGAATGGAGATCCCCTTTCTGCAACTGAATTTCCCTTGAGCTCATGACCTTATTATTCAATTCCTTGTGATGTCAGCGTCCCAGTGTAGGAGCCACTCACACAAAGCTTCTCTTCCCAAAGAGTGTTGTGCAAGTCAAGTCTGTTTTTCTAAAAATTCACTATTGCACTTTTTTCATAACTTGTAAGACTGAACGTGATAAGAATTCTGAACATAGGTGCGAAAGGTTTTAAGCTAATTCTGTTGTAAAATAAATACTAAGCCTTGTTATTCTCTGTTTCTCAG
Seq C2 exon
GCAGAGAAACAGGCAAAAAAACAGCAGGAAAAACAAGCGGACTTGGACTACGATGCTCAGAGAGAAGCCACCTTTCATTAAGAGCAAAAATTTCAGAGATAAAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824:ENSGALT00000015986:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGCAGGCAAAGATGAAATTG
R:
TTTGCTCTTAATGAAAGGTGGCT
Band lengths:
262-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]