GgaINT0048633 @ galGal4
Intron Retention
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35057221-35057996:-
Coord C1 exon
chr7:35057891-35057996
Coord A exon
chr7:35057286-35057890
Coord C2 exon
chr7:35057221-35057285
Length
605 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ATGATGTAATGTCTTGACAGCGA
3' ss Score
5.41
Exon sequences
Seq C1 exon
TGCTTCAAAGAAGGAGGGCGATGATGCACAGCCAGTTAAAAAAACCTACACCTGGAATACAAAAGAAGAAGCGAAACAGGCATTTAAAGAACTCCTAAAAGAAAAG
Seq A exon
GTATTTCCATCAGCTTTCTTTCTGCTTTATAGCTACCAAAGCTGCATTTACCAGGAATAGCTCGAGATCTGTTGTTGTTGCTCTTAAGAGTTGTTCACACTGAGGGAAGAGGATTTACATACTAGGTAAGAAATGTGAGAAAAGAAAAATACTGTGAAACCAGCATAGATGGCTGAAGCCTTTATCAGGAACATTTTGAGTGAGGAACAGGCTGTATGATTTTCATCAGAGCTCTCAGTTGTTTTTTTCCTCCTTTTACACGACACTCACATCGTAATCTAAACTAACCATTGTAATGTCTTACCATTGTAATGTATGACCGTTTGGTGTTTCTCCAGAATTCAGTCTGGAGCAGTGAGTAATTTGATGGGCACCTTCATTAGGTGCTTCAGAGACAGGTTAGAGATCCATATAGAGGGATGATAAACTGAAGTTTGGTATGCAGCATTCCCGTAAGCTGGTCTGTTTTAGAGATGATTTATTTTTCCTTGAAGTCAATGTTAAAACAAAGAATGGATTCCTAACCCCACAAGTGTAGTGCATTTCTCTGTCATTGTTGGATGATGATGCTAAATGTGATCAGTAATGATGTAATGTCTTGACAG
Seq C2 exon
CGAGTACCATCCAATGCTTCTTGGGAGCAAGCCATGAAAATGATCATTAATGATCCGAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526:ENSGALT00000020462:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF0184614=FF=PU(24.0=33.3)
A:
NA
C2:
PF0184614=FF=FE(42.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]